Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00962
         (747 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF040653-6|AAB95032.1|  508|Caenorhabditis elegans F-box b prote...    29   4.6  
AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical...    29   4.6  

>Z68879-3|CAA93084.1|  532|Caenorhabditis elegans Hypothetical
           protein K08F4.4 protein.
          Length = 532

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = -2

Query: 143 IKFICNNLVQLSNITKIAQNLALFSIT 63
           +  +C N++ + N+T+ AQ LA++ +T
Sbjct: 239 LSLVCKNIIDIDNLTETAQALAMYVVT 265


>AF040653-6|AAB95032.1|  508|Caenorhabditis elegans F-box b protein
           protein 51 protein.
          Length = 508

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 667 LTIESRQMAFMETVVSLSRVFFQNIESVNL 578
           LT++ RQ      +++LS+   QNIE +NL
Sbjct: 458 LTLQDRQPLTSSQLMTLSQAMLQNIEKINL 487


>AF024503-13|AAG24083.1|  347|Caenorhabditis elegans Hypothetical
           protein F31F4.15 protein.
          Length = 347

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/56 (25%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -3

Query: 649 QMAFMETVVSLSRVFFQNIESVNLYHISILSTNSF--TIKYRA*APAKLCYVYKEN 488
           + +  +T+  LSRV+ Q +E+++++H  I   + F   I+      AK C +++ +
Sbjct: 189 RFSIRDTISILSRVYAQTLENIHMWHTDIRDFDQFERMIEMDQWKNAKKCTIWESS 244


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,238,937
Number of Sequences: 27780
Number of extensions: 266457
Number of successful extensions: 477
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)