Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00961
         (652 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    26   4.1  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    25   7.2  
SPCC553.07c |mug40||DinB translesion DNA repair polymerase|Schiz...    25   7.2  

>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 551 RRQKESITKKSLETMSTNYLSKEI 480
           +RQ++   KKSL ++   YLS+EI
Sbjct: 448 KRQRKISEKKSLSSLMQQYLSREI 471


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 449 LLKYFDKFAVEFTLVLINLTFNVKLTESSNN**Q*YDNQRFNLLKYLPKINKNI 288
           L+   DK  +++TL  +++  N+ + E  +   Q  D+   N+L+Y  K NK I
Sbjct: 65  LVSTSDK-GIDYTLSAMSINPNLSVPEQQHLWLQIEDSSSQNILQYFEKSNKFI 117


>SPCC553.07c |mug40||DinB translesion DNA repair
           polymerase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -3

Query: 584 KTNLLKHVWHKRRQKESITKKSLETMSTNYLSKEICFAMRVR 459
           +++LLK      RQ   +T + L   +T  +SK  C AM+++
Sbjct: 442 ESDLLKPALQLLRQSYPMTIRLLGVRATKLVSKSRCLAMQLK 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,435,079
Number of Sequences: 5004
Number of extensions: 46559
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)