Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00961
         (652 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical ...    29   2.2  
AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical ...    29   2.2  

>AL110485-2|CAE45741.1| 1021|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1b protein.
          Length = 1021

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 479 CFAMRVRILLLLKYFDKFAVEFTLVLINLTFNVKLTESSN 360
           CF  RV   L L+ +D F VE   +LI + +N+      N
Sbjct: 762 CFLDRVPFSLALRLWDVFLVEGDCILIAMAYNIMKMHEKN 801


>AL110485-1|CAB60374.3| 1085|Caenorhabditis elegans Hypothetical
           protein Y46G5A.1a protein.
          Length = 1085

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 479 CFAMRVRILLLLKYFDKFAVEFTLVLINLTFNVKLTESSN 360
           CF  RV   L L+ +D F VE   +LI + +N+      N
Sbjct: 762 CFLDRVPFSLALRLWDVFLVEGDCILIAMAYNIMKMHEKN 801


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,857,421
Number of Sequences: 27780
Number of extensions: 237215
Number of successful extensions: 425
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)