Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00961
         (652 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.9  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   4.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.5  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.8  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +2

Query: 191 FGNYSKVTMVIKLQINSTYSGHFVMCQKLI*R*YFYLFSVNILVN*IFDYRIIVINY 361
           F  Y+KV +V     +  YS    MC  L     F L+ ++ ++  +    II++ Y
Sbjct: 176 FAIYTKVNLVEYPPESGNYSADSAMCAMLTIYADFPLYELSTIIFFLIPMLIILVVY 232


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 499 LVLIVSKDFFVIDSFCRLLCHTCLSKLVFI 588
           ++L V+  FF  D   R +   CLS  +F+
Sbjct: 104 IILPVAISFFNDDLSTRWIAFNCLSDTIFL 133


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 499 LVLIVSKDFFVIDSFCRLLCHTCLSKLVFI 588
           ++L V+  FF  D   R +   CLS  +F+
Sbjct: 104 IILPVAISFFNDDLSTRWIAFNCLSDTIFL 133


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 499 LVLIVSKDFFVIDSFCRLLCHTCLSKLVFI 588
           ++L V+  FF  D   R +   CLS  +F+
Sbjct: 104 IILPVAISFFNDDLSTRWIAFNCLSDTIFL 133


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/42 (23%), Positives = 21/42 (50%)
 Frame = +2

Query: 140 TNIMSISKECSLYSFN*FGNYSKVTMVIKLQINSTYSGHFVM 265
           T+   I+ +CSL  F+   N +  ++ +K    + Y G+  +
Sbjct: 75  TSYHRINLKCSLVEFSENKNCNAGSLTVKKNFANKYCGNITL 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,512
Number of Sequences: 438
Number of extensions: 3110
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)