Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00960
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch...    30   0.29 
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom...    28   1.2  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    28   1.5  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   2.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  

>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1133

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 14/63 (22%), Positives = 30/63 (47%)
 Frame = +3

Query: 516 NLTDKNLKVLNKLWNEDCSSKDWILDSISIKIKSTIERILLNKCHEIISQSNSINLDEIF 695
           N   +N     K + +   S+ W+LD +S+  + TI   L  K  +  +   ++ +D  F
Sbjct: 48  NSQHENANAAGKEYGDSGVSESWVLDFLSVTGEKTISEFLAQKIWKTSNGDLNVAVDMYF 107

Query: 696 EDT 704
           +++
Sbjct: 108 DES 110


>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 403

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/82 (15%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
 Frame = +1

Query: 280 ENVMNLVNDVYLRALESKSQNLKETDKCLDIFLIKEMKSMGINSIFDCDN-ADMEVIQAL 456
           ++++N++ DV+  A  ++  + +  + C +IF        G++ + DC++   +  + + 
Sbjct: 298 KSILNIIGDVFEAAATTQGIHFQPLENCFEIF--------GVDFLVDCESQVYLLEVNSY 349

Query: 457 MNLNEHSTKIEFIYENIYTGIL 522
            +  +    +  I EN+++ ++
Sbjct: 350 PDFKQTGKNLSNIIENLFSAVV 371


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +2

Query: 47  NTNLIIKVIKTNGDVCPDL-LYNNPLLDKTVTRALSKNFVNILNVSRDN---SNFNKNLR 214
           N   +I ++K+NG VC  L +YN     K + R L    V ++  + D+   +NF  N  
Sbjct: 788 NVPAVISIVKSNGGVCSTLNVYN-----KRLARHLEDGNVVLITCNEDSHIWTNFLDNAS 842

Query: 215 HSLLTYIRN 241
            +   +++N
Sbjct: 843 QNKTIFLQN 851


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -3

Query: 437 ISALSQSKIEFIPIDFISLIKKISRHLSVSFKFCDLLS 324
           + A+S S ++ I I+ +SL+K I+     SF F   L+
Sbjct: 251 VFAISSSSLQIIDINTLSLVKSINLKDDESFSFISRLT 288


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = +1

Query: 319 ALESKSQNLKETDKCLDIFLIKEMKSMGINSIFDCDNADMEVIQALMN 462
           A+ SKS N  E    LD  LI  +  MGI+     +NAD   ++A +N
Sbjct: 173 AVGSKSPNEPELLNSLDPSLIDSLMKMGISQDQIAENADF--VKAYLN 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,961
Number of Sequences: 5004
Number of extensions: 57097
Number of successful extensions: 175
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)