Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00960
         (721 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0266 - 16582912-16584918,16585041-16585229                       29   3.7  
03_06_0367 - 33413530-33413710,33414347-33414681,33414908-334150...    29   3.7  
03_05_1143 + 30709825-30709926,30710105-30710260,30710356-307104...    28   8.6  

>12_02_0266 - 16582912-16584918,16585041-16585229
          Length = 731

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +2

Query: 44  MNTNLIIKVIKTNGDVCPDLLYNNPLLDKTVTRALSKNFVNILNVSRDNS 193
           +N +LI  V    G+V    + +N LLD  V ++  +NFV +++  +D S
Sbjct: 274 INRSLIKPVQFKYGEVVSCRVVHNLLLDLIVEKSTEENFVTVISTDQDCS 323


>03_06_0367 -
           33413530-33413710,33414347-33414681,33414908-33415023,
           33415107-33415235,33415657-33415723,33415780-33415854,
           33416054-33416149,33416404-33416592
          Length = 395

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = -3

Query: 407 FIPIDFISLIKKISRHLSVSFKFCDLLSRALK*TSLTKFI 288
           F+P+ F S   K++R +++   FCD L  ++K  +L K +
Sbjct: 89  FLPLLFWSGHSKLARQMTLLMAFCDYLGNSVKLLTLWKSV 128


>03_05_1143 + 30709825-30709926,30710105-30710260,30710356-30710439,
            30710769-30710882,30711019-30711111,30711888-30711977,
            30712157-30712227,30712300-30712374,30712481-30712568,
            30712748-30712806,30712893-30712956,30713030-30713095,
            30713283-30713435,30713522-30713626,30713739-30713974,
            30714104-30714173,30714286-30714339,30714501-30714557,
            30714662-30714741,30716056-30717919
          Length = 1226

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
 Frame = +1

Query: 313  LRALESKSQNLKETDKCLD--IFLIKEMKSMGINSIFDCDNADM--EVIQALMNLNEHST 480
            LR+ E +++ L E  K  +  I + KE+KSM  +   DC  A +  EV    + L E   
Sbjct: 1047 LRSEEERTKLLSELKKSREQLIMVQKEIKSMNRHDDIDCKIASLESEVENCCLTLLEADV 1106

Query: 481  KIEFIYENIYTGI 519
            + +F+ +N  T I
Sbjct: 1107 E-KFVRDNTLTEI 1118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,603,195
Number of Sequences: 37544
Number of extensions: 266301
Number of successful extensions: 669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)