Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00960
         (721 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5902| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.9  
SB_35719| Best HMM Match : OAD_gamma (HMM E-Value=5.3)                 29   5.0  
SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)          29   5.0  
SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)    28   8.8  
SB_15099| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)                 28   8.8  

>SB_5902| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 454

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 558 NEDCSSKDWILDSISIKIKSTIERILLNKCHEIISQSNSINLDEI 692
           N DC+     +D I +K   T   I +NKC E ++   S+  D++
Sbjct: 259 NSDCTKITCAVDGI-VKTHKTTVTIKINKCDEPVTYDVSVKTDDL 302


>SB_35719| Best HMM Match : OAD_gamma (HMM E-Value=5.3)
          Length = 262

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
 Frame = +1

Query: 256 PKEHIKTDENV--MNLVNDVYLRALESKSQ-NLKETDKCLDIFLIKEMKSMGINSIFDCD 426
           P E  K DEN    N   D+ L+  + K+  NLK+ D   D+ L K+     +N   D D
Sbjct: 37  PHEECKPDENEGEENDKYDLNLKEEDGKADLNLKKDDDKADLNLKKDDDKADLNLKKDDD 96

Query: 427 NADMEV 444
            AD+ +
Sbjct: 97  KADLNL 102


>SB_16018| Best HMM Match : Antimicrobial18 (HMM E-Value=0.89)
          Length = 1494

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 18/57 (31%), Positives = 32/57 (56%)
 Frame = -3

Query: 443 TSISALSQSKIEFIPIDFISLIKKISRHLSVSFKFCDLLSRALK*TSLTKFITFSSV 273
           T++  +S+ +  F+P DF++     S  L+ S    D LS +   +SL+ F+T SS+
Sbjct: 300 TNVGPISEQQGIFLPSDFLTSSSLPSDFLTSSSSLSDFLSLS---SSLSDFLTSSSL 353


>SB_54838| Best HMM Match : Vitellogenin_N (HMM E-Value=4.76441e-44)
          Length = 2581

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = +1

Query: 271  KTDENVMNLVNDVYLRALESKSQNLKETDKCLDIFLIKEMKSMGINSIFDCDNAD-MEVI 447
            KTDE +++       R  E KSQ  K+   C + F      ++ + S  +  + D  +V+
Sbjct: 2100 KTDEKLISFNVTALNRTAEVKSQWYKKPTFCANRFTASFNSTIYVESWLNYLHTDSSKVL 2159

Query: 448  QALMNLNEHSTKIEFIYE 501
            Q    + + S  ++F YE
Sbjct: 2160 QMNATVAKRSMDVKFFYE 2177


>SB_15099| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-12)
          Length = 318

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = -2

Query: 546 LELLSSYR*DSSVYILINEFN-FCTMFIQVHQSLDHFHISIITVEN*IYTHRFHFL 382
           L  +S  R  S+ Y  ++ F  F +MF     SL+H H  I  +E+     RF+FL
Sbjct: 101 LASVSDQRLFSTCYRALDIFTGFASMFTLATISLEHVHAVIWPLEHRALRKRFYFL 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,865
Number of Sequences: 59808
Number of extensions: 348230
Number of successful extensions: 941
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)