Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00960
         (721 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative transcri...    23   7.2  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    23   7.2  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    23   9.5  

>AJ439060-13|CAD27764.1|  319|Anopheles gambiae putative
           transcription factor protein.
          Length = 319

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 624 ERILLNKCHEIISQSNS 674
           ++++L KC E++S SNS
Sbjct: 293 QQLVLPKCDELLSNSNS 309


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 621 IERILLNKCHEIISQSNSINLDE 689
           +ER++LN+ HE +    S  L +
Sbjct: 503 LERLILNRLHEFLEDPESPRLSD 525


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1168

 Score = 23.0 bits (47), Expect = 9.5
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 621 IERILLNKCHEIISQSNSINLDE 689
           +ER+LLN+ +E I    S  L E
Sbjct: 512 LERLLLNRLNEYIEDPESPQLSE 534


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 642,713
Number of Sequences: 2352
Number of extensions: 12968
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)