Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00960
         (721 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    30   0.025
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    28   0.10 
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    28   0.10 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.9  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              23   3.8  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.1  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    22   5.1  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   8.9  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 29.9 bits (64), Expect = 0.025
 Identities = 16/72 (22%), Positives = 37/72 (51%)
 Frame = +2

Query: 29  KKNSRMNTNLIIKVIKTNGDVCPDLLYNNPLLDKTVTRALSKNFVNILNVSRDNSNFNKN 208
           ++ S  N N   K  +T+ +   D        ++ +  +LS N+++ ++   +N+N+NK 
Sbjct: 284 EQKSYKNENSYRKYRETSKERSRDKTERERSKERKIISSLSNNYISNISNYNNNNNYNKK 343

Query: 209 LRHSLLTYIRNV 244
           L ++ + YI  +
Sbjct: 344 LYYN-INYIEQI 354


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 10/40 (25%), Positives = 26/40 (65%)
 Frame = +2

Query: 125 DKTVTRALSKNFVNILNVSRDNSNFNKNLRHSLLTYIRNV 244
           ++ +  +LS N+++ ++   +N+N+NK L ++ + YI  +
Sbjct: 78  ERKIISSLSNNYISNISNYNNNNNYNKKLYYN-INYIEQI 116


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 14/41 (34%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 125 DKTVTRALSKNFV-NILNVSRDNSNFNKNLRHSLLTYIRNV 244
           ++ +  +LS N++ NI N + DN N+NK L ++ + YI  +
Sbjct: 78  ERKIISSLSNNYISNISNYNNDN-NYNKKLYYN-INYIEQI 116


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 645 CHEIISQSNSINLDEIFEDTD 707
           CH  I +     LDEIF D+D
Sbjct: 366 CHPDIQEKVIQELDEIFGDSD 386


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +2

Query: 5   CII*NINV--KKNSRMNTNLIIKVI 73
           C++   NV  KKN ++  NL+ KVI
Sbjct: 74  CVLEKFNVMDKKNGKIRYNLLKKVI 98


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 155 NFVNILNVSRDNSNFNKNLRHSLLTYIRNVCQV 253
           N+ N  N +  N+N+N N +     YI N+ Q+
Sbjct: 96  NYNNNYN-NNYNNNYNNNYKKLYKNYIINIEQI 127


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 155 NFVNILNVSRDNSNFNKNLRHSLLTYIRNVCQV 253
           N+ N  N +  N+N+N N +     YI N+ Q+
Sbjct: 96  NYNNNYN-NNYNNNYNNNYKKLYKNYIINIEQI 127


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 155 SWKVLSSLFYP 123
           SW++ ++LFYP
Sbjct: 218 SWRITNNLFYP 228



 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -2

Query: 195 FELSLDTFKILTKFLESALVTVLSNRGLLYRRS 97
           F +  DTF ++   L  AL  + +N  +LY  S
Sbjct: 235 FNIKGDTFDLMDGILGLALGPIRNNDRILYFHS 267


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 256 PKEHIKTDENVMNLVNDV 309
           PKE +K D    N+V D+
Sbjct: 298 PKEQVKEDSLYTNIVVDI 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,178
Number of Sequences: 438
Number of extensions: 3696
Number of successful extensions: 17
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)