Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00960
         (721 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16490.1 68415.m01891 XH domain-containing protein contains P...    29   2.3  
At5g19840.1 68418.m02357 transcription factor jumonji (jmjC) dom...    29   4.1  
At3g55040.1 68416.m06112 In2-1 protein, putative similar to In2-...    28   5.4  
At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB protein...    28   7.2  
At3g17980.1 68416.m02287 C2 domain-containing protein similar to...    27   9.5  
At3g05390.1 68416.m00589 expressed protein ; expression supporte...    27   9.5  

>At2g16490.1 68415.m01891 XH domain-containing protein contains Pfam
           PF03469: XH domain
          Length = 179

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +1

Query: 337 QNLKETDKCLDIFLIKEMKSMGINSIFDCDNADMEVIQALMNLNEHSTKIEFIYE 501
           + LK T K +  FL+ ++KS+    I  C  + +  I  L++LN+H   I  +Y+
Sbjct: 124 KKLKSTLKEVIKFLLNDIKSLKRQRICRCVISFLVDIGLLIDLNQHKPHIVLVYK 178


>At5g19840.1 68418.m02357 transcription factor jumonji (jmjC)
           domain-containing protein low similarity to PASS1 [Homo
           sapiens] GI:21591407; contains Pfam profile PF02373:
           jmjC domain
          Length = 505

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
 Frame = +3

Query: 510 HWNLTD-KNLKVLNKLWNEDCSSKDWILDSISIKIKSTIERILLNKCHEIISQSNSINLD 686
           H N  D K+ +V + LWN + S    +L +++     T+E ++L+    I ++  +   D
Sbjct: 383 HVNAVDTKDDRVAHLLWNLEASRLRDVLLAMARYFPRTLEALILHMLSPIAAEVLTQKFD 442

Query: 687 EIFEDTDLND 716
           EI + T   D
Sbjct: 443 EIDQQTGEED 452


>At3g55040.1 68416.m06112 In2-1 protein, putative similar to In2-1
           protein, Zea mays, P49248
          Length = 292

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 515 PVYIFS*MNSIFVLCSFKFI-RAWITSISALSQSKIEFIPID 393
           PV +F     +++  +  F  RAWI       Q+KIE +PID
Sbjct: 73  PVQVFDGSTRLYISYTCPFAQRAWIARNYKGLQNKIELVPID 114


>At1g07200.1 68414.m00766 ATP-dependent Clp protease ClpB
           protein-related similar to ATP-dependent Clp protease,
           ATP-binding subunit ClpB (GI:24982014) [Pseudomonas
           putida KT2440]; similar to  ClpB protein
           (SP:Q9RA63){Thermus thermophilus}
          Length = 422

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -3

Query: 452 AWITSISALSQSKIEFIPIDFISLIKKISRHLSVSFKFC 336
           AW          K+ F P+DF  L K I   +   F+ C
Sbjct: 298 AWFDEFIEKVDGKVTFKPVDFDELAKNIQEKIGSHFERC 336


>At3g17980.1 68416.m02287 C2 domain-containing protein similar to
           zinc finger and C2 domain protein GI:9957238 from
           [Arabidopsis thaliana]
          Length = 177

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 516 NLTDKNLKVLNKLWNEDCSSKDWILDSISIKIKSTIERI 632
           ++TD NL VL  +++ D  SKD  +     +IK  IE +
Sbjct: 71  SVTDSNLTVLLTVYDHDMFSKDDKMGDAEFEIKPYIEAL 109


>At3g05390.1 68416.m00589 expressed protein ; expression supported
           by MPSS
          Length = 463

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 343 LKETDKCLDIFLIKEMKSMGINSIFDCDNADMEVIQALMNLNEHSTK 483
           L+  D C +I+ IKE+ S G +     D  D EV++ + NL E   K
Sbjct: 44  LQNEDTCNNIYTIKEVSSEGFDLKALHDRVD-EVLEKMDNLYEKLEK 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,086,120
Number of Sequences: 28952
Number of extensions: 257833
Number of successful extensions: 755
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)