Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00958
         (651 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    61   2e-08
UniRef50_Q9XXW0 Cluster: Endonuclease and reverse transcriptase-...    44   0.004
UniRef50_UPI0000D578A4 Cluster: PREDICTED: similar to RNA-direct...    37   0.48 
UniRef50_UPI0000E49A7A Cluster: PREDICTED: hypothetical protein,...    35   1.5  
UniRef50_UPI0000E48C88 Cluster: PREDICTED: similar to KIAA0756 s...    35   1.5  
UniRef50_Q2R6D8 Cluster: Retrotransposon protein, putative, uncl...    34   3.4  
UniRef50_Q10JM6 Cluster: Retrotransposon protein, putative, Ty3-...    33   4.5  
UniRef50_UPI0000E48C89 Cluster: PREDICTED: similar to Nr-CAM pro...    33   5.9  
UniRef50_A0CV87 Cluster: Chromosome undetermined scaffold_29, wh...    33   5.9  
UniRef50_Q2GR38 Cluster: Predicted protein; n=1; Chaetomium glob...    33   7.8  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 61.3 bits (142), Expect = 2e-08
 Identities = 32/44 (72%), Positives = 33/44 (75%)
 Frame = -1

Query: 288 QPTEFLAGSSQWSRFRSGGRFCEARLLLGLVLATSSGLSHVSSP 157
           QP +FLAGSSQ SRFRS GRFCEA LLLGLVLA S  LS    P
Sbjct: 73  QPMKFLAGSSQSSRFRSDGRFCEALLLLGLVLANSLRLSPYELP 116


>UniRef50_Q9XXW0 Cluster: Endonuclease and reverse
           transcriptase-like protein; n=9; cellular organisms|Rep:
           Endonuclease and reverse transcriptase-like protein -
           Bombyx mori (Silk moth)
          Length = 960

 Score = 43.6 bits (98), Expect = 0.004
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +3

Query: 501 GTVFRKWRIDINPTKSTAVHFKRG 572
           G  FRKWRIDINP KSTAV F+RG
Sbjct: 710 GQWFRKWRIDINPAKSTAVLFQRG 733


>UniRef50_UPI0000D578A4 Cluster: PREDICTED: similar to RNA-directed
           DNA polymerase from mobile element jockey (Reverse
           transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
           similar to RNA-directed DNA polymerase from mobile
           element jockey (Reverse transcriptase) - Tribolium
           castaneum
          Length = 678

 Score = 36.7 bits (81), Expect = 0.48
 Identities = 15/22 (68%), Positives = 17/22 (77%)
 Frame = +3

Query: 513 RKWRIDINPTKSTAVHFKRGRL 578
           RKWR+ INPTKSTA+ FK   L
Sbjct: 438 RKWRVKINPTKSTAILFKHPNL 459


>UniRef50_UPI0000E49A7A Cluster: PREDICTED: hypothetical protein,
            partial; n=1; Strongylocentrotus purpuratus|Rep:
            PREDICTED: hypothetical protein, partial -
            Strongylocentrotus purpuratus
          Length = 1565

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 75   WQAIHKYLFGGNDHHFTEIIFHPKL 1
            WQAIH + +GG+D H+ E+ + P+L
Sbjct: 1440 WQAIHPFYYGGDDFHY-EVAYRPRL 1463



 Score = 34.3 bits (75), Expect = 2.6
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -1

Query: 75   WQAIHKYLFGGNDHHFTEIIFHPKL 1
            WQAIH + +GG+D H+ E+ + P++
Sbjct: 1228 WQAIHPFYYGGDDFHY-EVAYRPRI 1251


>UniRef50_UPI0000E48C88 Cluster: PREDICTED: similar to KIAA0756
           splice variant 1; n=1; Strongylocentrotus
           purpuratus|Rep: PREDICTED: similar to KIAA0756 splice
           variant 1 - Strongylocentrotus purpuratus
          Length = 797

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 75  WQAIHKYLFGGNDHHFTEIIFHPKL 1
           WQAIH + +GG+D H+ E+ + P+L
Sbjct: 537 WQAIHPFYYGGDDFHY-EVAYRPRL 560



 Score = 35.1 bits (77), Expect = 1.5
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -1

Query: 75  WQAIHKYLFGGNDHHFTEIIFHPKL 1
           WQAIH + +GG+D H+ E+ + P+L
Sbjct: 672 WQAIHPFYYGGDDFHY-EVAYRPRL 695


>UniRef50_Q2R6D8 Cluster: Retrotransposon protein, putative,
           unclassified, expressed; n=4; Oryza sativa (japonica
           cultivar-group)|Rep: Retrotransposon protein, putative,
           unclassified, expressed - Oryza sativa subsp. japonica
           (Rice)
          Length = 715

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 176 KPDDVANTSPSKSRASQNLPPDRKRDH*EDPARNSVGCKA 295
           KP D +++S S S +S N  P R  DH   P   S GC+A
Sbjct: 271 KPSDSSSSSSSSSSSSSNRHPRRAHDH-RQPTAPSGGCRA 309


>UniRef50_Q10JM6 Cluster: Retrotransposon protein, putative,
           Ty3-gypsy subclass; n=5; Oryza sativa (japonica
           cultivar-group)|Rep: Retrotransposon protein, putative,
           Ty3-gypsy subclass - Oryza sativa subsp. japonica (Rice)
          Length = 1727

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 176 KPDDVANTSPSKSRASQNLPPDRKRDH*EDPARNSVGCKA 295
           +P D +++S S S +S +  P R RDH   P   S GC+A
Sbjct: 410 EPSDPSSSSSSASSSSSDRHPRRSRDH-RQPTAPSAGCRA 448


>UniRef50_UPI0000E48C89 Cluster: PREDICTED: similar to Nr-CAM
           protein; n=1; Strongylocentrotus purpuratus|Rep:
           PREDICTED: similar to Nr-CAM protein -
           Strongylocentrotus purpuratus
          Length = 1235

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = -1

Query: 75  WQAIHKYLFGGNDHHFTEIIFHPKL 1
           WQ+IH + +GG+D H+ E+ + P++
Sbjct: 712 WQSIHPFYYGGDDFHY-EVAYRPRM 735


>UniRef50_A0CV87 Cluster: Chromosome undetermined scaffold_29, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_29,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 264

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -2

Query: 545 FRGVDVNAPLPEHCPMVVTAIWSTSLCLK-PIYSYHFL 435
           ++ ++   PLP+HCP V   + ST+ CL  P Y  H +
Sbjct: 102 WKKMNFQTPLPKHCPKVSYIVCSTTTCLDVPHYRMHIV 139


>UniRef50_Q2GR38 Cluster: Predicted protein; n=1; Chaetomium
           globosum|Rep: Predicted protein - Chaetomium globosum
           (Soil fungus)
          Length = 256

 Score = 32.7 bits (71), Expect = 7.8
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -1

Query: 351 PYFYPPYSRRPIT*QLAREALQPTEFLAGSSQWSRFRSGGRFCEA--RLLLGLVLATSSG 178
           PY  PP    P + +  R  +   E L  S++W R +   R  EA  +  + ++ ++  G
Sbjct: 12  PYRKPP----PGSVEANRATVTDWEPLEPSARWRRIQGSARVSEAERKSWVRIIQSSREG 67

Query: 177 LSHVSSPTS*GY 142
           LS  +SPTS GY
Sbjct: 68  LSSETSPTSLGY 79


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 670,175,483
Number of Sequences: 1657284
Number of extensions: 13670591
Number of successful extensions: 35862
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35852
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)