Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00958
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin pr...    22   3.8  
AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin pr...    22   3.8  
AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin pr...    22   3.8  
AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin pr...    22   3.8  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    21   6.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.7  

>AF506023-1|AAM46899.1|   76|Tribolium castaneum polyubiquitin
           protein.
          Length = 76

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 17  VEPSDTIENVKAKIQDKEGIPPDQQR 42


>AF506022-1|AAM46898.1|  685|Tribolium castaneum polyubiquitin
           protein.
          Length = 685

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 17  VEPSDTIENVKAKIQDKEGIPPDQQR 42



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 93  VEPSDTIENVKAKIQDKEGIPPDQQR 118



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 169 VEPSDTIENVKAKIQDKEGIPPDQQR 194



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 245 VEPSDTIENVKAKIQDKEGIPPDQQR 270



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 321 VEPSDTIENVKAKIQDKEGIPPDQQR 346



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 397 VEPSDTIENVKAKIQDKEGIPPDQQR 422



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 473 VEPSDTIENVKAKIQDKEGIPPDQQR 498



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 549 VEPSDTIENVKAKIQDKEGIPPDQQR 574



 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 625 VEPSDTIENVKAKIQDKEGIPPDQQR 650


>AF506021-1|AAM46897.1|   64|Tribolium castaneum polyubiquitin
           protein.
          Length = 64

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 17  VEPSDTIENVKAKIQDKEGIPPDQQR 42


>AF506020-1|AAM46896.1|  112|Tribolium castaneum polyubiquitin
           protein.
          Length = 112

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = +2

Query: 173 LKPDDVANTSPSKSRASQNLPPDRKR 250
           ++P D      +K +  + +PPD++R
Sbjct: 65  VEPSDTIENVKAKIQDKEGIPPDQQR 90


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 443 GTNISALNRAKYSRSQLPPWDSVP 514
           GTNI   ++ + +  QL P  S+P
Sbjct: 463 GTNIYTSSKRQRTSPQLSPMSSLP 486


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 601 LQLGASTPPPLVRHYF 648
           L+LG    PP +RH F
Sbjct: 405 LKLGGRFEPPQIRHAF 420


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,320
Number of Sequences: 336
Number of extensions: 3284
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)