Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00958
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce... 27 1.8
SPAC23C11.17 |||mitochondrial inner membrane protein involved in... 27 3.1
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 4.1
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 26 4.1
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 26 5.4
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 7.2
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 25 9.5
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar... 25 9.5
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 25 9.5
>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 413
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +2
Query: 440 NGTNISALNRAKYSRSQLPPWDSVPEVAH*HQPHEKHSGAFQKGSPPNTTLS 595
N +S + ++ +++LPP + + E + QP +S A SP + TLS
Sbjct: 49 NSYPLSTPSSFQHGQTRLPPINCLAEPFNRPQPWHSNSAAPASSSPTSATLS 100
>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
potassium ion transport|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 3.1
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -1
Query: 309 QLAREALQPTEFLAGSSQWSRFRSGG-RFCEARLLLGLVLATSSGL 175
Q+A E +PT + S W R + G F + LLG+ + SS L
Sbjct: 101 QVAAEETKPTTVVKKPSIWQRVKGGVLHFWDGTKLLGVEIKISSKL 146
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 297 EALQPTEFLAGSSQWSRFRSGGRFCEARLLLGLVLAT 187
+ Q TE LAG S WS F F + L+ G ++ T
Sbjct: 75 DEFQHTEELAGVSSWSDFFYLFHFSDIPLIFGTLIFT 111
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 26.2 bits (55), Expect = 4.1
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Frame = +1
Query: 436 RKWYEYIGFKQSEVLQIAV---TTMGQCSGSGALTSTPRKAQRCISKGVASEHHIE 594
R ++E G EVL V +T G+ G G LT K +C+++ ++ EHH++
Sbjct: 180 RDYFEQFG----EVLDCTVMRDSTTGRSRGFGFLTF---KNPKCVNEVMSKEHHLD 228
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 5.4
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = -1
Query: 309 QLAREALQPTEFLAGSSQWSRFRSGGRFCEARLLLGLVLATSSGLSHVSSPTS*GYDEIA 130
+LA ++ PTE + +SRF + E + +G VL SS S V T Y
Sbjct: 132 KLANQSTLPTELFQSQNDYSRFLPKRKDFEKKSQVGPVL--SSNASTVRMNTIIDYQPDV 189
Query: 129 YQGYQL 112
+ Y+L
Sbjct: 190 CKDYKL 195
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 302 RARLCSPLSFSLDLLSGHVSDP 237
+ RL PL++S +L GH+ DP
Sbjct: 52 KKRLNRPLTYSEKILYGHLDDP 73
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -3
Query: 559 CTAVLFVGLMSMRHFRNTVPW--W*LRSGVLRS--V*SRYIRTISFTSAISVILLIVFYR 392
C +V +RH + PW W +G S + ++Y+ +F S + L ++Y
Sbjct: 208 CAIYCYVRFFKLRHTPFSRPWWAWLFFTGFFLSCTISTKYVGFFTFLSIGLSVCLELWYL 267
Query: 391 WTL 383
W +
Sbjct: 268 WDI 270
>SPMIT.03 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial||Partial|Manual
Length = 323
Score = 25.0 bits (52), Expect = 9.5
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = -3
Query: 481 GVLRSV*SRYIRTISFTSAISVILLIVFYRWTLFQLVSYTRWRSLLLPSIFKTSYNLTVS 302
G +S + Y + SF SA VI Y + +SY +WR L I + + +LT S
Sbjct: 250 GYRKSQDTYYYGSTSFGSAKKVINYFDNYHLLSSKYISYLKWRKAYL--IIQENKHLTES 307
>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 425
Score = 25.0 bits (52), Expect = 9.5
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = -2
Query: 584 CSEATPFEMHRCAFRGVDVNAPL 516
C + F HRC R D N P+
Sbjct: 251 CLPISVFNTHRCIERSTDCNCPI 273
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,738,493
Number of Sequences: 5004
Number of extensions: 56368
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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