Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00958
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057...    32   0.46 
08_01_0981 + 9915225-9916748                                           29   2.4  
01_06_0928 + 33085403-33089224                                         29   4.2  
02_05_0691 - 30949234-30949243,30949613-30950001,30950425-309504...    28   5.6  
03_05_0961 - 29224548-29225125,29225286-29225308,29225736-292258...    27   9.8  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    27   9.8  

>02_05_0278 +
           27404914-27404947,27405088-27405228,27405747-27405772,
           27406036-27406071,27406296-27406976
          Length = 305

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +1

Query: 529 TSTPRKAQRCISKGVASEHHIEHPLQLGASTPPPLV 636
           TSTPR A RC S   AS      P +  AS P P V
Sbjct: 244 TSTPRSAPRCASARAASRRSSAAPARRRASEPRPRV 279


>08_01_0981 + 9915225-9916748
          Length = 507

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = -2

Query: 362 KMALLTSTLHIQDVL*LDS*RARLCSPLSFSLDLLSGHVSDPEVDSAKH 216
           K+A   + LH+     ++  R +  +P S S+D+LS +++DP+     H
Sbjct: 244 KLAAAHAALHVFVSEMMEKARKQEAAPSSMSMDVLSSYINDPDYVGLLH 292


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -1

Query: 531  CQCATSGTLSHGGNCDLEYFALF 463
            CQC +S +L  GG   LE FAL+
Sbjct: 1066 CQCRSSASLHVGGLTSLELFALY 1088


>02_05_0691 -
           30949234-30949243,30949613-30950001,30950425-30950449,
           30950594-30950688,30950842-30951359,30951652-30951736,
           30951842-30952633
          Length = 637

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +2

Query: 425 SASEGNGTNISALNRAKYSRSQLPPWDSVPEVAH*HQPHEKHSGAFQKGSPPN 583
           SAS+G     S+  R     S+ PP D+ P V   ++ H   S   +K SPP+
Sbjct: 294 SASDGRYPVASSTRRNSLPASRSPPPDASPSV---NKRHSSSSARNKKQSPPS 343


>03_05_0961 -
           29224548-29225125,29225286-29225308,29225736-29225864,
           29226533-29228217
          Length = 804

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +2

Query: 353 APSCIGDKLKKRPPIKNN*KYHRNS---ASEGNGTNISALNRAKYSR 484
           A SC+  +  KRPP+K   K   N      E NG + SA  RA  SR
Sbjct: 692 AKSCLNPRSSKRPPMKYILKALENPLKVVREDNGGSSSARLRATSSR 738


>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
            5139967-5140289,5141373-5142479,5142593-5143279,
            5144214-5144522,5145488-5145823,5146165-5146263,
            5146676-5146940,5146950-5147104,5147666-5149723,
            5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 47   PKRYLCIACHKNYRLSQIF 103
            P RY C+ CH+ Y +S  F
Sbjct: 1598 PSRYHCLTCHETYLISTEF 1616


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,687,740
Number of Sequences: 37544
Number of extensions: 402339
Number of successful extensions: 1123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1122
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)