Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00958
(651 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06) 31 1.1
SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08) 30 1.9
SB_14824| Best HMM Match : F5_F8_type_C (HMM E-Value=1.5e-17) 30 1.9
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18) 29 2.5
SB_28637| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30) 29 4.3
SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14) 29 4.3
SB_12764| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0) 29 4.3
>SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)
Length = 479
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -3
Query: 487 RSGVLRSV*SRYIRTISFTSAISVILLIVFYRWTLFQLVSYTR 359
R G+L S+ Y T F + IS++ LI Y+W +F+ ++ R
Sbjct: 231 RVGILLSIVWFYSSTGRFLTLISLLALIYMYQWGVFRWLTQNR 273
>SB_16016| Best HMM Match : RVT_1 (HMM E-Value=9.7e-08)
Length = 890
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +2
Query: 176 KPDDVANTSPSKSRASQNLPPDRKRDH*EDPARNSVGCKASRANC 310
KPD+V ++++ + PPDR D R + C A+ C
Sbjct: 44 KPDEVKYAQRFETKSQRRQPPDRCGYCGRDHPRGKINCPAANVRC 88
>SB_14824| Best HMM Match : F5_F8_type_C (HMM E-Value=1.5e-17)
Length = 409
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/69 (26%), Positives = 30/69 (43%)
Frame = -3
Query: 472 RSV*SRYIRTISFTSAISVILLIVFYRWTLFQLVSYTRWRSLLLPSIFKTSYNLTVSARG 293
R V +RYIR +S S + + + Y + V + ++LP+ +L ARG
Sbjct: 164 RPVGARYIRVLSTASNGATCMRMELYGCNRYVAVKVAQMSDVVLPASSSGHVDLQCLARG 223
Query: 292 FAAH*VSRW 266
+ RW
Sbjct: 224 YGMEITFRW 232
>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
Length = 1085
Score = 29.5 bits (63), Expect = 2.5
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +1
Query: 526 LTSTPRKAQRCISKGVASEHHIEHPLQLGASTPPP 630
LT+T ++ ++ +S+G E+ I PLQ T PP
Sbjct: 834 LTATKKRNRKTVSQGQDGENPISSPLQCQNHTAPP 868
>SB_28637| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 195
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
Frame = +2
Query: 353 APSC-IGDKLKKR--PPIKNN*KYHRNSASEGNGTNISALNRAKYSRSQLPPWDSVPE 517
+P C +G K + R P KY RNS + N NI S++PPW + PE
Sbjct: 79 SPQCFMGIKKETRLEAPFSVALKYRRNSRGKYNKRNIFISQTYARRHSKIPPW-TAPE 135
>SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)
Length = 1043
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = -3
Query: 472 RSV*SRYIRTISFTSAISVILLIVFYRWTLFQLVSYTRWRSLLLPSIFKTSYNLTVSARG 293
R V +RYIR +S S + + + Y + V ++LP+ +L ARG
Sbjct: 162 RPVGARYIRVLSTASNGATCMRMELYGCNRYVAVKVAPMSDVVLPASSSGHVDLQCLARG 221
Query: 292 FAAH*VSRW 266
+ RW
Sbjct: 222 YGMEITFRW 230
>SB_40773| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +3
Query: 477 TPDRSYHH--GTVFRKWRIDINPTKSTAVHFKRGRLRTPH*ASTPTRGVNT 623
TP S H G VF + + ++ S+ F+R R RT H S P + T
Sbjct: 381 TPSGSPHRSGGKVFPRHKRTLSAGNSSMSPFRRSRTRTAHAPSVPALTIQT 431
>SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14)
Length = 908
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = -3
Query: 472 RSV*SRYIRTISFTSAISVILLIVFYRWTLFQLVSYTRWRSLLLPSIFKTSYNLTVSARG 293
R V +RYIR +S S + + + Y + V ++LP+ +L ARG
Sbjct: 178 RPVGARYIRVLSTASNGATCMRMELYGCNRYVAVKVAPMSDVVLPASSSGHVDLQCLARG 237
Query: 292 FAAH*VSRW 266
+ RW
Sbjct: 238 YGMEITFRW 246
>SB_12764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 28.7 bits (61), Expect = 4.3
Identities = 18/69 (26%), Positives = 29/69 (42%)
Frame = -3
Query: 472 RSV*SRYIRTISFTSAISVILLIVFYRWTLFQLVSYTRWRSLLLPSIFKTSYNLTVSARG 293
R V +RYIR +S S + + + Y + V ++LP+ +L ARG
Sbjct: 29 RPVGARYIRVLSTASNGATCMRMELYGCNRYVAVKVAPMSDVVLPASSSGHVDLQCLARG 88
Query: 292 FAAH*VSRW 266
+ RW
Sbjct: 89 YGMEITFRW 97
>SB_5403| Best HMM Match : TSP_1 (HMM E-Value=0)
Length = 684
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 632 NGGGVDAPSWSGCSMWCSEATPFEMHRC 549
NGG D SWS C+ CS T C
Sbjct: 412 NGGWSDYSSWSSCTKSCSGGTRTRTRTC 439
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,643,742
Number of Sequences: 59808
Number of extensions: 436549
Number of successful extensions: 1021
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 920
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1021
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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