Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00958
(651 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y12643-1|CAA73190.1| 486|Homo sapiens methyl-CpG binding protei... 31 3.6
X94628-1|CAA64331.1| 477|Homo sapiens methyl-CpG-binding prote... 31 3.6
X89430-1|CAA61599.1| 476|Homo sapiens methyl CpG binding protei... 31 3.6
L37298-1|AAC32737.1| 486|Homo sapiens methyl-CpG-binding protei... 31 3.6
BX538060-1|CAD97991.1| 516|Homo sapiens hypothetical protein pr... 31 3.6
BC011612-1|AAH11612.1| 486|Homo sapiens methyl CpG binding prot... 31 3.6
AY541280-1|AAS55455.1| 498|Homo sapiens methyl CpG binding prot... 31 3.6
AJ132917-1|CAB46446.1| 486|Homo sapiens Methyl-CpG-binding prot... 31 3.6
AF158180-1|AAF33023.1| 486|Homo sapiens methyl CpG binding prot... 31 3.6
AF030876-2|AAC08757.1| 486|Homo sapiens Methyl-CpG binding prot... 31 3.6
X99686-1|CAA68001.1| 486|Homo sapiens methyl-CpG-binding protei... 30 6.2
BC029104-1|AAH29104.1| 792|Homo sapiens CPT1C protein protein. 30 8.2
>Y12643-1|CAA73190.1| 486|Homo sapiens methyl-CpG binding protein 2
protein.
Length = 486
Score = 31.1 bits (67), Expect = 3.6
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Frame = +1
Query: 340 VEVRSAILYRRQVEKASTYKKQLEVSPK*R**RKWYEYIGFKQSEVLQ-IAVTTMGQCSG 516
V +A ++ V+++S Q V P + RK E + + EV++ + V+T+G+ SG
Sbjct: 276 VAAAAAEAKKKAVKESSIRSVQETVLPIKK--RKTRETVSIEVKEVVKPLLVSTLGEKSG 333
Query: 517 SGALT--STPRKAQRCISKGVAS--------EHHIEHPLQLGASTPPPLV 636
G T S RK++ KG +S EHH H P PL+
Sbjct: 334 KGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLL 383
>X94628-1|CAA64331.1| 477|Homo sapiens methyl-CpG-binding protein
protein.
Length = 477
Score = 31.1 bits (67), Expect = 3.6
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Frame = +1
Query: 340 VEVRSAILYRRQVEKASTYKKQLEVSPK*R**RKWYEYIGFKQSEVLQ-IAVTTMGQCSG 516
V +A ++ V+++S Q V P + RK E + + EV++ + V+T+G+ SG
Sbjct: 267 VAAAAAEAKKKAVKESSIRSVQETVLPIKK--RKTRETVSIEVKEVVKPLLVSTLGEKSG 324
Query: 517 SGALT--STPRKAQRCISKGVAS--------EHHIEHPLQLGASTPPPLV 636
G T S RK++ KG +S EHH H P PL+
Sbjct: 325 KGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLL 374
>X89430-1|CAA61599.1| 476|Homo sapiens methyl CpG binding protein 2
protein.
Length = 476
Score = 31.1 bits (67), Expect = 3.6
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Frame = +1
Query: 340 VEVRSAILYRRQVEKASTYKKQLEVSPK*R**RKWYEYIGFKQSEVLQ-IAVTTMGQCSG 516
V +A ++ V+++S Q V P + RK E + + EV++ + V+T+G+ SG
Sbjct: 266 VAAAAAEAKKKAVKESSIRSVQETVLPIKK--RKTRETVSIEVKEVVKPLLVSTLGEKSG 323
Query: 517 SGALT--STPRKAQRCISKGVAS--------EHHIEHPLQLGASTPPPLV 636
G T S RK++ KG +S EHH H P PL+
Sbjct: 324 KGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLL 373
>L37298-1|AAC32737.1| 486|Homo sapiens methyl-CpG-binding protein
protein.
Length = 486
Score = 31.1 bits (67), Expect = 3.6
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Frame = +1
Query: 340 VEVRSAILYRRQVEKASTYKKQLEVSPK*R**RKWYEYIGFKQSEVLQ-IAVTTMGQCSG 516
V +A ++ V+++S Q V P + RK E + + EV++ + V+T+G+ SG
Sbjct: 276 VAAAAAEAKKKAVKESSIRSVQETVLPIKK--RKTRETVSIEVKEVVKPLLVSTLGEKSG 333
Query: 517 SGALT--STPRKAQRCISKGVAS--------EHHIEHPLQLGASTPPPLV 636
G T S RK++ KG +S EHH H P PL+
Sbjct: 334 KGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLL 383
>BX538060-1|CAD97991.1| 516|Homo sapiens hypothetical protein
protein.
Length = 516
Score = 31.1 bits (67), Expect = 3.6
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Frame = +1
Query: 340 VEVRSAILYRRQVEKASTYKKQLEVSPK*R**RKWYEYIGFKQSEVLQ-IAVTTMGQCSG 516
V +A ++ V+++S Q V P + RK E + + EV++ + V+T+G+ SG
Sbjct: 306 VAAAAAEAKKKAVKESSIRSVQETVLPIKK--RKTRETVSIEVKEVVKPLLVSTLGEKSG 363
Query: 517 SGALT--STPRKAQRCISKGVAS--------EHHIEHPLQLGASTPPPLV 636
G T S RK++ KG +S EHH H P PL+
Sbjct: 364 KGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLL 413
>BC011612-1|AAH11612.1| 486|Homo sapiens methyl CpG binding protein
2 (Rett syndrome) protein.
Length = 486
Score = 31.1 bits (67), Expect = 3.6
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Frame = +1
Query: 340 VEVRSAILYRRQVEKASTYKKQLEVSPK*R**RKWYEYIGFKQSEVLQ-IAVTTMGQCSG 516
V +A ++ V+++S Q V P + RK E + + EV++ + V+T+G+ SG
Sbjct: 276 VAAAAAEAKKKAVKESSIRSVQETVLPIKK--RKTRETVSIEVKEVVKPLLVSTLGEKSG 333
Query: 517 SGALT--STPRKAQRCISKGVAS--------EHHIEHPLQLGASTPPPLV 636
G T S RK++ KG +S EHH H P PL+
Sbjct: 334 KGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLL 383
>AY541280-1|AAS55455.1| 498|Homo sapiens methyl CpG binding protein
2 isoform B protein.
Length = 498
Score = 31.1 bits (67), Expect = 3.6
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Frame = +1
Query: 340 VEVRSAILYRRQVEKASTYKKQLEVSPK*R**RKWYEYIGFKQSEVLQ-IAVTTMGQCSG 516
V +A ++ V+++S Q V P + RK E + + EV++ + V+T+G+ SG
Sbjct: 288 VAAAAAEAKKKAVKESSIRSVQETVLPIKK--RKTRETVSIEVKEVVKPLLVSTLGEKSG 345
Query: 517 SGALT--STPRKAQRCISKGVAS--------EHHIEHPLQLGASTPPPLV 636
G T S RK++ KG +S EHH H P PL+
Sbjct: 346 KGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLL 395
>AJ132917-1|CAB46446.1| 486|Homo sapiens Methyl-CpG-binding protein
2 protein.
Length = 486
Score = 31.1 bits (67), Expect = 3.6
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Frame = +1
Query: 340 VEVRSAILYRRQVEKASTYKKQLEVSPK*R**RKWYEYIGFKQSEVLQ-IAVTTMGQCSG 516
V +A ++ V+++S Q V P + RK E + + EV++ + V+T+G+ SG
Sbjct: 276 VAAAAAEAKKKAVKESSIRSVQETVLPIKK--RKTRETVSIEVKEVVKPLLVSTLGEKSG 333
Query: 517 SGALT--STPRKAQRCISKGVAS--------EHHIEHPLQLGASTPPPLV 636
G T S RK++ KG +S EHH H P PL+
Sbjct: 334 KGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLL 383
>AF158180-1|AAF33023.1| 486|Homo sapiens methyl CpG binding protein
2 protein.
Length = 486
Score = 31.1 bits (67), Expect = 3.6
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Frame = +1
Query: 340 VEVRSAILYRRQVEKASTYKKQLEVSPK*R**RKWYEYIGFKQSEVLQ-IAVTTMGQCSG 516
V +A ++ V+++S Q V P + RK E + + EV++ + V+T+G+ SG
Sbjct: 276 VAAAAAEAKKKAVKESSIRSVQETVLPIKK--RKTRETVSIEVKEVVKPLLVSTLGEKSG 333
Query: 517 SGALT--STPRKAQRCISKGVAS--------EHHIEHPLQLGASTPPPLV 636
G T S RK++ KG +S EHH H P PL+
Sbjct: 334 KGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLL 383
>AF030876-2|AAC08757.1| 486|Homo sapiens Methyl-CpG binding protein
2 protein.
Length = 486
Score = 31.1 bits (67), Expect = 3.6
Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 11/110 (10%)
Frame = +1
Query: 340 VEVRSAILYRRQVEKASTYKKQLEVSPK*R**RKWYEYIGFKQSEVLQ-IAVTTMGQCSG 516
V +A ++ V+++S Q V P + RK E + + EV++ + V+T+G+ SG
Sbjct: 276 VAAAAAEAKKKAVKESSIRSVQETVLPIKK--RKTRETVSIEVKEVVKPLLVSTLGEKSG 333
Query: 517 SGALT--STPRKAQRCISKGVAS--------EHHIEHPLQLGASTPPPLV 636
G T S RK++ KG +S EHH H P PL+
Sbjct: 334 KGLKTCKSPGRKSKESSPKGRSSSASSPPKKEHHHHHHHSESPKAPVPLL 383
>X99686-1|CAA68001.1| 486|Homo sapiens methyl-CpG-binding protein 2
protein.
Length = 486
Score = 30.3 bits (65), Expect = 6.2
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 11/78 (14%)
Frame = +1
Query: 436 RKWYEYIGFKQSEVLQ-IAVTTMGQCSGSGALT--STPRKAQRCISKGVAS--------E 582
RK E + + EV++ + V+T+G+ SG G T S RK++ KG +S E
Sbjct: 306 RKTRETVSIEVKEVVKPLLVSTLGEKSGKGLKTCKSPGRKSKESSPKGRSSSASSPPKKE 365
Query: 583 HHIEHPLQLGASTPPPLV 636
HH H P PL+
Sbjct: 366 HHHHHHHSESPKAPVPLL 383
>BC029104-1|AAH29104.1| 792|Homo sapiens CPT1C protein protein.
Length = 792
Score = 29.9 bits (64), Expect = 8.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 377 LKKRPPIKNN*KYHRNSASEGNGTNISALNRAKYSRSQLPP 499
L+ R P+ N Y+ +A GN + L R + +R ++PP
Sbjct: 242 LRSRNPLMVNSNYYMMAARAGNAVHALLLYRHRLNRQEIPP 282
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,535,207
Number of Sequences: 237096
Number of extensions: 2121606
Number of successful extensions: 5131
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5126
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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