Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00958
         (651 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.      30   2.4  
AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse tran...    30   2.4  
AF024604-1|AAB82274.1| 1751|Drosophila melanogaster transcriptio...    30   3.1  
AF024603-1|AAB82273.1| 1773|Drosophila melanogaster transcriptio...    30   3.1  
AY113527-1|AAM29532.1|  297|Drosophila melanogaster RE60512p pro...    29   4.1  
AE014297-64|AAF52141.1|  297|Drosophila melanogaster CG9768-PA p...    29   4.1  

>AY180919-1|AAN87272.1|  884|Drosophila melanogaster ORF1 protein.
          Length = 884

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 510 FRKWRIDINPTKSTAVHFKRGR 575
           ++KW+I INP K+ A+ F + R
Sbjct: 726 YKKWKIKINPNKTNAIFFTKRR 747


>AF456125-1|AAL57609.1|  832|Drosophila melanogaster reverse
           transcriptase protein.
          Length = 832

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 510 FRKWRIDINPTKSTAVHFKRGR 575
           ++KW+I INP K+ A+ F + R
Sbjct: 674 YKKWKIKINPNKTNAIFFTKRR 695


>AF024604-1|AAB82274.1| 1751|Drosophila melanogaster transcriptional
            co-repressor SIN3A protein.
          Length = 1751

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = +1

Query: 508  CSGSGALTSTPRKAQRCISKGVASEHHIEHPLQLGASTPPPLVRH 642
            C+ SG  TS PR+AQ     GV  E  +EHP     S P  L  H
Sbjct: 1441 CTSSGVATS-PRQAQDTAGAGVDVEIKLEHPADF--SNPKLLPPH 1482


>AF024603-1|AAB82273.1| 1773|Drosophila melanogaster transcriptional
            co-repressor SIN3A protein.
          Length = 1773

 Score = 29.9 bits (64), Expect = 3.1
 Identities = 19/45 (42%), Positives = 22/45 (48%)
 Frame = +1

Query: 508  CSGSGALTSTPRKAQRCISKGVASEHHIEHPLQLGASTPPPLVRH 642
            C+ SG  TS PR+AQ     GV  E  +EHP     S P  L  H
Sbjct: 1441 CTSSGVATS-PRQAQDTAGAGVDVEIKLEHPADF--SNPKLLPPH 1482


>AY113527-1|AAM29532.1|  297|Drosophila melanogaster RE60512p
           protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +2

Query: 422 NSASEGNGTNISALNRAKYSRSQLPPWDSVPEVAH*H---QPHEKHSGAFQKGSPPN 583
           +S++        ALN + Y+R+  P  D+ P     H    P + H+ A    +PPN
Sbjct: 69  SSSNSSKSCYEEALNHSSYTRTSTPLLDAAPHPVFSHPQSSPLDTHAAATASLAPPN 125


>AE014297-64|AAF52141.1|  297|Drosophila melanogaster CG9768-PA
           protein.
          Length = 297

 Score = 29.5 bits (63), Expect = 4.1
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = +2

Query: 422 NSASEGNGTNISALNRAKYSRSQLPPWDSVPEVAH*H---QPHEKHSGAFQKGSPPN 583
           +S++        ALN + Y+R+  P  D+ P     H    P + H+ A    +PPN
Sbjct: 69  SSSNSSKSCYEEALNHSSYTRTSTPLLDAAPHPVFSHPQSSPLDTHAAATASLAPPN 125


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,345,876
Number of Sequences: 53049
Number of extensions: 656284
Number of successful extensions: 2290
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2290
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2765538900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)