Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00958
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U39853-1|AAK39227.2|  390|Caenorhabditis elegans Hypothetical pr...    27   8.7  
U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain (pr...    27   8.7  

>AC025721-2|AAK29901.3|  976|Caenorhabditis elegans Hypothetical
           protein Y48G8AL.10 protein.
          Length = 976

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 44  PPKRYLCIACHKNYRLSQIFS 106
           P K +LC  CHK++R +Q+ S
Sbjct: 618 PRKSHLCWTCHKSFRTAQLLS 638


>Z92782-9|CAE17814.1|  329|Caenorhabditis elegans Hypothetical
           protein F14F8.12 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -2

Query: 119 ISLGRKKFAIICSSCGRRYINIFLAGMIIILLRLFFI 9
           + +G+  F + C   G   ++ F+A  I++ + LF+I
Sbjct: 49  VEMGQNYFILFCFEVGLTVVDYFIATFILLFIILFYI 85


>U39853-1|AAK39227.2|  390|Caenorhabditis elegans Hypothetical
           protein F13B9.6 protein.
          Length = 390

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +1

Query: 469 SEVLQIAVTTMGQCSGSGALTSTPRKAQRCISKGVAS 579
           S  +++A+T     SG G LT  PRK ++C  KG  S
Sbjct: 29  SSNIEVALTFAKSFSG-GVLTENPRKYEQCRWKGNGS 64


>U23448-5|AAL27227.1|  912|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 5, isoform c
           protein.
          Length = 912

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
 Frame = +1

Query: 442 WYEYIGFKQSEVLQIAVT-TMGQCSGSGALTSTPRKAQRCISKGVASEHHIEHPLQLGAS 618
           W+ +   K++   +I  +  +   S S AL STP +     S  V   HH  H L     
Sbjct: 99  WFPFTDQKETSSNEILSSLNLAAGSSSPALPSTPSRVPHHPSSQV---HHFHHNLHHHTH 155

Query: 619 TPPPLVRHYF 648
           T   +  HYF
Sbjct: 156 THNVVQNHYF 165


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,279,663
Number of Sequences: 27780
Number of extensions: 321414
Number of successful extensions: 935
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 935
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)