Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00957
         (583 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    39   0.099
UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bomb...    34   2.8  
UniRef50_A7AVQ6 Cluster: Variant erythrocyte surface antigen-1, ...    33   3.7  
UniRef50_A2TSA8 Cluster: Putative uncharacterized protein; n=1; ...    33   4.9  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 38.7 bits (86), Expect = 0.099
 Identities = 17/20 (85%), Positives = 18/20 (90%)
 Frame = -2

Query: 582 LHR*VDELTAHLVLSGYWNP 523
           L R VDELTAHLVLSGYW+P
Sbjct: 156 LLRWVDELTAHLVLSGYWSP 175


>UniRef50_A1XDB3 Cluster: STIP; n=1; Bombyx mori|Rep: STIP - Bombyx
           mori (Silk moth)
          Length = 782

 Score = 33.9 bits (74), Expect = 2.8
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = -2

Query: 405 NRRVWWYPLAQTHKRSYHQ 349
           +R  WWY  A+THKRSYH+
Sbjct: 567 SRAEWWYLPARTHKRSYHR 585


>UniRef50_A7AVQ6 Cluster: Variant erythrocyte surface antigen-1,
           alpha subunit; n=4; Babesia bovis|Rep: Variant
           erythrocyte surface antigen-1, alpha subunit - Babesia
           bovis
          Length = 1309

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = -3

Query: 464 HSYNGCPTLQTETHYCFTAEIGGCGGTHSRRLTRDPTTSNLFINNRES 321
           H +N     Q  T YC    IG  GG HS   T++P   +L+ N+  S
Sbjct: 498 HEFNLFAHFQAVTQYCPLVLIGIQGGIHSTDNTKEPAIHSLYANSHFS 545


>UniRef50_A2TSA8 Cluster: Putative uncharacterized protein; n=1;
           Dokdonia donghaensis MED134|Rep: Putative
           uncharacterized protein - Dokdonia donghaensis MED134
          Length = 172

 Score = 33.1 bits (72), Expect = 4.9
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = +3

Query: 249 SSPPLPPTLLRCLKGKSFDCNRYFTFAIIDKKVTGGRISCESARVGTT 392
           SS P  PTL   L   +++ N Y +  +I ++VTGG  +   + VG T
Sbjct: 25  SSEPAGPTLTPALLAGTYNLNFYESEEVIQEEVTGGTATTTISEVGDT 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,267,483
Number of Sequences: 1657284
Number of extensions: 9707450
Number of successful extensions: 22651
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 22033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22649
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40404161459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)