Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00957
         (583 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    26   0.20 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        26   0.27 
EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    22   3.3  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    22   3.3  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 26.2 bits (55), Expect = 0.20
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 441 GGAAVVTMLETLELISQGGWRI*LWMSMGSSNHLIPG 551
           G A ++   E +EL  +GGW++ +W     + H+  G
Sbjct: 292 GEAGMLGYNEIVELQKEGGWKV-VWDDTQKNTHMYKG 327


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 25.8 bits (54), Expect = 0.27
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +3

Query: 234 GRCIVSSPPLPPTLLRCLKGKSFDCNRYFTFAIIDKKVTGGRI 362
           G C  S+ P    + R L+GK  +C+     AI++  VT   I
Sbjct: 144 GICDRSTAPSVSAISRLLRGKGGECDEITIQAILEFSVTNPTI 186


>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 453 RLPHPSNRNALLLHGRNRRVWWYPLAQTHKR 361
           R+PH  N NA     R+  VW   + +  +R
Sbjct: 336 RMPHKCNGNAHNCPSRSHPVWEIVMNELDRR 366


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 453 RLPHPSNRNALLLHGRNRRVWWYPLAQTHKR 361
           R+PH  N NA     R+  VW   + +  +R
Sbjct: 343 RMPHKCNGNAHNCPSRSHPVWEIVMNELDRR 373


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,818
Number of Sequences: 336
Number of extensions: 2465
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)