Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00957
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyce...    27   2.0  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    26   4.6  
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|...    25   6.1  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    25   8.1  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   8.1  

>SPAC222.05c |mss1||COX RNA-associated protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 496

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 396 PAYFCREAVMRFGLKGGAAVVTMLETLELISQGG 497
           P+ F  E V+   L GG AVV +  TLE I Q G
Sbjct: 90  PSSFTGEDVVELQLHGGTAVVDV--TLEAIKQSG 121


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 5/47 (10%)
 Frame = +2

Query: 401  LFLP*SSNAFRFEG-WGSRCNYA*DLRTY----ISRWVAHLVVDVYG 526
            LF+  + N F ++G   S+ +Y  + RT+    IS W A LV++V+G
Sbjct: 973  LFVQGAFNRFGYDGSMPSKMSYNLENRTWSYDLISTWPAELVLNVWG 1019


>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 828

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = -1

Query: 529 EPIDIHN*MRHPP*DISS----KVSSIVTTAAPPFKPKRITASRQ 407
           EP+ + N     P  + S    K SSI+  + PPF+ + IT S +
Sbjct: 600 EPVSLENQSHISPPQVDSQSEYKESSILAPSNPPFETESITDSTE 644


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 142 HLSGEKGSSLHLFQLPHPLRLT 207
           +LSG++G    LF+LP  +R T
Sbjct: 237 YLSGQRGIERQLFELPSYIRAT 258


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 84  GERAVGEVDVDRRRGCSIM 140
           GE+ VG  D+ R+ GCS++
Sbjct: 421 GEKGVGIQDILRKSGCSVI 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,340
Number of Sequences: 5004
Number of extensions: 37669
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)