Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00957
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0344 - 33276366-33276548,33277044-33277169,33277254-332773...    29   2.7  
03_02_0628 + 9957385-9957888,9957985-9958111,9958541-9958608,995...    29   2.7  
01_06_1749 - 39636951-39638102                                         29   3.6  
09_06_0308 - 22199389-22199451,22199604-22199924,22200178-222004...    28   4.7  

>03_06_0344 -
           33276366-33276548,33277044-33277169,33277254-33277322,
           33277401-33277505,33277595-33277633,33277717-33278016,
           33278093-33278182,33278271-33278312,33278433-33278516,
           33278762-33278947,33279218-33279403,33279663-33280025
          Length = 590

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 48  KINLLVGPSATEGERAVGEVDVDRRRGCSIMSSLGREG 161
           K+N+ +  SA++  R + +VD  RR G S  +  GR+G
Sbjct: 543 KVNIDLESSASKHRRKMRKVDGGRRHGISAANPYGRKG 580


>03_02_0628 +
           9957385-9957888,9957985-9958111,9958541-9958608,
           9958695-9958772,9958885-9958949,9959130-9959196,
           9959344-9959526,9959690-9959746,9959857-9959952,
           9960061-9960219
          Length = 467

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +3

Query: 54  NLLVGPSATEGERAVGEVDVDRRRGCSIMSSLGREGI 164
           +L VG SA E ERA+GE  VD     S+  SL    +
Sbjct: 87  SLTVGGSAAEPERALGEPAVDAGGDLSLSPSLSHAAV 123


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 469 SSIVTTAAPPFKPKRITA 416
           SS+ + AAPPF P RIT+
Sbjct: 164 SSVASAAAPPFDPSRITS 181


>09_06_0308 -
           22199389-22199451,22199604-22199924,22200178-22200423,
           22202152-22203337,22203487-22203551,22204205-22204486,
           22205005-22205106,22205587-22206105
          Length = 927

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 231 GGRCIVSSPPLPPTLLRCLKGKSFD 305
           G RCI   P LPP LLR + G+  D
Sbjct: 319 GFRCICGWPNLPPDLLREISGQLHD 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,741
Number of Sequences: 37544
Number of extensions: 307299
Number of successful extensions: 797
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)