Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00957
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               29   2.8  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.7  
SB_30396| Best HMM Match : M20_dimer (HMM E-Value=4e-08)               28   6.4  
SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)              27   8.5  

>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 477 LRSQA*LQRLPHPSNRNALLLHG 409
           LR Q  +QR P P+ RN++ LHG
Sbjct: 24  LRQQNQVQRRPEPTPRNSIFLHG 46


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 456 QRLPHPSNRNALLLHGRNRRVWWYPLAQTHKRSYH 352
           Q+ PH  NR    + G     WWY L    K+SY+
Sbjct: 536 QKHPHQDNRTVSKILGE----WWYALGPEEKQSYN 566


>SB_30396| Best HMM Match : M20_dimer (HMM E-Value=4e-08)
          Length = 489

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 2/83 (2%)
 Frame = -3

Query: 557 QPTW--Y*VVTGTHRHPQLNAPPTLRYKF*GLKHSYNGCPTLQTETHYCFTAEIGGCGGT 384
           +PTW  + VVT     P +  P +    +       N    L  + H CF A     G T
Sbjct: 307 KPTWRVHGVVTNGGAKPNI-IPDSASMSYYIRTPLENDIKVLHQKVHACFKAAALATGCT 365

Query: 383 HSRRLTRDPTTSNLFINNRESKI 315
              +    P  SNL  NN  +K+
Sbjct: 366 ADIKWNTTPFYSNLVTNNALAKL 388


>SB_57009| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 564

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 449 CPTLQTETHYCFTAEIGGCGGTHSRRLTRD 360
           C   + +THY F   + GCG T  RR T++
Sbjct: 188 CHAYENKTHYIFKTPLTGCGTT--RRHTKN 215


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,669,452
Number of Sequences: 59808
Number of extensions: 309607
Number of successful extensions: 715
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)