Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00957
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical p...    29   3.2  
Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical ...    29   3.2  
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    29   3.2  
U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis...    27   9.7  
AC006775-1|AAF60622.2|  551|Caenorhabditis elegans Hypothetical ...    27   9.7  

>Z67881-3|CAD44099.1| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 456 QRLPHPSNRNALLLHGRNRRVWWYPLAQTHKRSYHQ 349
           Q+ P+  NR    + G     WWY LA   K  YH+
Sbjct: 863 QQYPNKDNRTVSKILGE----WWYSLAADQKAEYHK 894


>Z50797-11|CAA90676.2| 1405|Caenorhabditis elegans Hypothetical
           protein T22H6.6a protein.
          Length = 1405

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 456 QRLPHPSNRNALLLHGRNRRVWWYPLAQTHKRSYHQ 349
           Q+ P+  NR    + G     WWY LA   K  YH+
Sbjct: 863 QQYPNKDNRTVSKILGE----WWYSLAADQKAEYHK 894


>Z50797-9|CAL36516.1|  640|Caenorhabditis elegans Hypothetical
           protein T22H6.6b protein.
          Length = 640

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -2

Query: 456 QRLPHPSNRNALLLHGRNRRVWWYPLAQTHKRSYHQ 349
           Q+ P+  NR    + G     WWY LA   K  YH+
Sbjct: 98  QQYPNKDNRTVSKILGE----WWYSLAADQKAEYHK 129


>AL132898-6|CAC14409.1|  187|Caenorhabditis elegans Hypothetical
           protein Y59A8B.9 protein.
          Length = 187

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 496 PP*DISSKVSSIVTTAAPPFKPKRITASRQK*AGVVVPTRADSQEILPPVTFLSIIA 326
           P   +++  +   T AAPP +P    +S    A    PT A  +   PPV   S +A
Sbjct: 33  PQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCAPPVRSASTVA 89


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = -1

Query: 496 PP*DISSKVSSIVTTAAPPFKPKRITASRQK*AGVVVPTRADSQEILPPVTFLSIIA 326
           P   +++  +   T AAPP +P    +S    A    PT A  +   PPV   S +A
Sbjct: 162 PQKPVTTMRTPAATPAAPPTRPTPSRSSAAPRATAPTPTAAPPKTCAPPVRSASTVA 218


>U55369-1|AAK52175.1| 1247|Caenorhabditis elegans Cystic fibrosis
           transmembrane conductanceregulator homolog protein 1
           protein.
          Length = 1247

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = -1

Query: 40  RTAPMPPIEPDL 5
           +TAP PP+EPDL
Sbjct: 394 KTAPQPPVEPDL 405


>AC006775-1|AAF60622.2|  551|Caenorhabditis elegans Hypothetical
           protein Y46H3B.2 protein.
          Length = 551

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = -1

Query: 568 GRAHSPPGIKWLLEPIDIHN*MRHPP*DISSKVSSIVTTAAPPFKPKRITA 416
           G  HS  G +W+     I+    HPP D  +   +   +  PP + +R TA
Sbjct: 94  GLGHSVAGWEWMNGDSSIYRNWAHPP-DAPTAEPTTEPSTLPPAEQRRSTA 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,294,951
Number of Sequences: 27780
Number of extensions: 230131
Number of successful extensions: 542
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)