Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00957
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.18 
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    27   0.18 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.7  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   3.8  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    22   3.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   3.8  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   6.7  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   8.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 231 GGRCIVSSPPLPP 269
           GG C++  PPLPP
Sbjct: 431 GGSCLIHGPPLPP 443


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 26.6 bits (56), Expect = 0.18
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 231 GGRCIVSSPPLPP 269
           GG C++  PPLPP
Sbjct: 431 GGSCLIHGPPLPP 443


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 12/41 (29%), Positives = 17/41 (41%)
 Frame = -3

Query: 449 CPTLQTETHYCFTAEIGGCGGTHSRRLTRDPTTSNLFINNR 327
           C T  ++T  CF  + G C  T   ++   P T     N R
Sbjct: 437 CKTCNSKTKCCFAQDDGLCPYTLKHKIRVPPGTPIYECNKR 477


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = -3

Query: 518 HPQLNAPPTLRYKF*GLKHSYNGCPTLQTETHYCF 414
           H + N P  +   F G KH + G P   ++  + F
Sbjct: 525 HSEQNVPGAVVRVFLGPKHDHQGRPISISKNQHLF 559


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 234 GRCIVSSPPLPPTLLRCLK 290
           G  I ++PP+PP + R L+
Sbjct: 100 GSHIPTAPPIPPEIQRALE 118


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 2   P*VRFDWRHWR 34
           P V  DWRHW+
Sbjct: 856 PAVYEDWRHWK 866


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = -1

Query: 43  WRTAPMPPIEPDL 5
           W   P PP  PDL
Sbjct: 264 WDVLPHPPYSPDL 276


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +1

Query: 388 PPHPPISAVKQ*CV 429
           PP PP+  V   CV
Sbjct: 180 PPEPPVPTVTSACV 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,611
Number of Sequences: 438
Number of extensions: 2838
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)