Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00957
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g80610.1 68414.m09459 expressed protein                             29   1.7  
At1g61730.1 68414.m06962 DNA-binding storekeeper protein-related...    29   1.7  
At3g30550.1 68416.m03866 hypothetical protein includes At2g05890...    29   3.0  
At3g49320.1 68416.m05392 expressed protein contains Pfam profile...    28   5.2  

>At1g80610.1 68414.m09459 expressed protein
          Length = 211

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 70  LAPQRAKEPSVRWMWIDEEVAL*CHLSGEKGSSLHLFQLPHPL 198
           L  QRA+  +++ M  + + AL C L+ E+GSS  L  L  PL
Sbjct: 159 LEQQRARNTALKKMKAESQSALSCKLTFEQGSSFLLPDLNMPL 201


>At1g61730.1 68414.m06962 DNA-binding storekeeper protein-related
           contains Pfam profile: PF04504 protein of unknown
           function, DUF573; similar to storekeeper protein
           GI:14268476 [Solanum tuberosum]
          Length = 376

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 493 P*DISSKVSSIVTTAAPPFKPKRITASRQK*AGVVVPTRADSQEILPP 350
           P  I  K  S  T AAPP K   ++ +    +G    T +DS+   PP
Sbjct: 42  PIKIRIKSPSATTAAAPPAKSTAVSTAADSDSGSETETDSDSESTNPP 89


>At3g30550.1 68416.m03866 hypothetical protein includes At2g05890,
           At4g07450, At3g30630, At3g43100, At2g09960, At3g30550,
           At1g39430, At2g10460, At4g03640, At5g35250
          Length = 509

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 246 VSSPPLPPTLLRCLKGKSFDCNRYFTFAIIDKKVTGGRISCESARVGT 389
           +  P + P ++ CLKGK+F     F   +  + + GG  S   ARV T
Sbjct: 384 IEDPTVLPDVINCLKGKTFQ----FLLCVQRENIFGGYDSFTVARVYT 427


>At3g49320.1 68416.m05392 expressed protein contains Pfam profile
           PF03690: Uncharacterised protein family (UPF0160)
          Length = 354

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 306 CNRYFTFAIIDKKVTGGRISCESARVGTTTPAYFCREAVMRFGLK 440
           C+R +  ++  K+ +  R S  + RVGT    + C EA+  F L+
Sbjct: 9   CSRIWNRSLFLKRSSNFRASFSTKRVGTHNGTFHCDEALACFILR 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,808,077
Number of Sequences: 28952
Number of extensions: 222121
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)