Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00956
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    26   6.4  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    26   6.4  

>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 320 DPVITFPKFEQKYDTTI 370
           +P I+FP F+  Y+TT+
Sbjct: 390 NPFISFPSFQTSYETTV 406


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 585 NIIKNSNIFSSHIFKLFS*VYF*SEISCVFRFASHL 692
           NI K+SN+  S    LFS +YF SE+   F F S L
Sbjct: 261 NIKKDSNVKCSKKQILFSLLYFSSEVYLSFVFWSVL 296


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,781,997
Number of Sequences: 5004
Number of extensions: 53343
Number of successful extensions: 97
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)