Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00956
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF067945-13|AAC17676.2|  308|Caenorhabditis elegans Serpentine r...    28   7.8  

>Z48009-4|CAA88084.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.6 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -2

Query: 207 TLLLIYNSVCKKQHNFFL--RFQTQ*TIL*MSNVCVGSV*KYLSVFLNIY 64
           T +L YN  C+ Q  F +  RFQ Q  I     +C  +V ++++VFLN +
Sbjct: 205 TFILKYNKRCEYQTRFKVGARFQKQELIESTKAICFLTVSQFVAVFLNSF 254


>AF067945-13|AAC17676.2|  308|Caenorhabditis elegans Serpentine
           receptor, class x protein59 protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = -2

Query: 465 TYVFVGSFIPLFAYDDAIVSSKAGVLTKDHH*MVVSYFCSNFGNVITGSQYIS 307
           T VFV   +P F +    +SS   V    H    + YFC     VITGS++++
Sbjct: 26  TAVFVLHKLPSFKHAFGYLSSSQAVADAIHSTFFMLYFCP---MVITGSEFLT 75


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,559
Number of Sequences: 27780
Number of extensions: 295226
Number of successful extensions: 590
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)