Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00956
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    22   6.8  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    22   6.8  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    22   6.8  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    22   6.8  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   6.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.0  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   9.0  

>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 554 LKRLSLQNGNEHYKKFKYIF*SHFQIILISV 646
           L   ++ N N +YKK +Y   ++ + I + V
Sbjct: 85  LSNKTIHNNNNNYKKLQYYNINYIEQIPVPV 115


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 554 LKRLSLQNGNEHYKKFKYIF*SHFQIILISV 646
           L   ++ N N +YKK +Y   ++ + I + V
Sbjct: 85  LSNKTIHNNNNNYKKLQYYNINYIEQIPVPV 115


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 554 LKRLSLQNGNEHYKKFKYIF*SHFQIILISV 646
           L   ++ N N +YKK +Y   ++ + I + V
Sbjct: 85  LSNKTIHNNNNNYKKLQYYNINYIEQIPVPV 115


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 554 LKRLSLQNGNEHYKKFKYIF*SHFQIILISV 646
           L   ++ N N +YKK +Y   ++ + I + V
Sbjct: 85  LSNKTIHNNNNNYKKLQYYNINYIEQIPVPV 115


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = +2

Query: 554 LKRLSLQNGNEHYKKFKYIF*SHFQIILISV 646
           L   ++ N N +YKK +Y   ++ + I + V
Sbjct: 318 LSNKTIHNNNNNYKKLQYYNINYIEQIPVPV 348


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 663  SCVFRFASHLIASY 704
            +C+FR   H +ASY
Sbjct: 1614 NCLFRKPEHFVASY 1627


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 6/9 (66%), Positives = 9/9 (100%)
 Frame = +3

Query: 393 RLPYSRLWR 419
           R+PY+R+WR
Sbjct: 81  RVPYNRVWR 89


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 191 ITVYVKNSIIFFCAFKLNEQFYKCQTSVLEVSENT*VFFL 72
           +  YV+  ++  C F  +E  Y   TS  +  E   ++FL
Sbjct: 58  LNAYVRFKLVTDCIFVTSEPGYFLYTSKNDNEEVCGIYFL 97


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,874
Number of Sequences: 438
Number of extensions: 3798
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)