Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00955
         (565 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9GPN0 Cluster: Notch-like transmembrane receptor; n=7;...    36   0.86 

>UniRef50_Q9GPN0 Cluster: Notch-like transmembrane receptor; n=7;
            Caenorhabditis briggsae|Rep: Notch-like transmembrane
            receptor - Caenorhabditis briggsae
          Length = 1270

 Score = 35.5 bits (78), Expect = 0.86
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
 Frame = -3

Query: 134  VPQPEPRMRICKGYPSDNTASAANKKIEVMLNG--LTALKEQYSHL 3
            VPQP+PR R+CK   S NT        +V  NG   T + ++ +HL
Sbjct: 1149 VPQPDPRSRVCKNRESANTKGGRQTMKKVKRNGSKKTPMIQETNHL 1194


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 478,485,707
Number of Sequences: 1657284
Number of extensions: 8103343
Number of successful extensions: 12859
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 12638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12857
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 37904934977
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)