Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00955
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    28   5.9  
10_08_0547 - 18682357-18682683,18682971-18683060,18683279-186833...    27   7.8  

>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = -1

Query: 256 DK*TV*VKTVHPLSHSLENRSHQH*PCLLLPHSGC 152
           DK  V  KTV+PL     N S  H  C    H GC
Sbjct: 110 DKCVVCNKTVYPLEKVNLNGSSYHKSCFRCTHGGC 144


>10_08_0547 -
           18682357-18682683,18682971-18683060,18683279-18683301,
           18683397-18683496,18683615-18683749
          Length = 224

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/44 (36%), Positives = 17/44 (38%)
 Frame = -1

Query: 256 DK*TV*VKTVHPLSHSLENRSHQH*PCLLLPHSGC*LPMGMYHS 125
           DK T   KTV+PL          H  C    H GC L    Y S
Sbjct: 102 DKCTACKKTVYPLEKMTMEGECYHRTCFKCAHGGCLLTNASYAS 145


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,544,862
Number of Sequences: 37544
Number of extensions: 215650
Number of successful extensions: 324
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 324
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)