Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00955
         (565 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g45800.1 68415.m05696 LIM domain-containing protein similar t...    28   5.0  
At3g61230.1 68416.m06852 LIM domain-containing protein similar t...    27   8.7  

>At2g45800.1 68415.m05696 LIM domain-containing protein similar to
           PGPS/D1 [Petunia x hybrida] GI:4105772, LIM domain
           protein PLIM1 [Nicotiana tabacum] GI:5932418; contains
           Pfam profile PF00412: LIM domain
          Length = 226

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = -1

Query: 256 DK*TV*VKTVHPLSH-SLENRSHQH*PCLLLPHSGC*LPMGMYHS 125
           DK     KTV+PL   ++E  S+ H  C    HSGC L    Y S
Sbjct: 104 DKCATCKKTVYPLEKVTMEGESY-HKTCFRCTHSGCPLTHSSYAS 147


>At3g61230.1 68416.m06852 LIM domain-containing protein similar to
           SP|P29675 Pollen specific protein SF3 {Helianthus
           annuus}; contains Pfam profile PF00412: LIM domain
          Length = 213

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/42 (35%), Positives = 16/42 (38%)
 Frame = -1

Query: 256 DK*TV*VKTVHPLSHSLENRSHQH*PCLLLPHSGC*LPMGMY 131
           DK     KTV+PL          H  C    HSGC L    Y
Sbjct: 105 DKCAACKKTVYPLEKMTMEGESYHKTCFRCAHSGCPLTHSSY 146


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,333,716
Number of Sequences: 28952
Number of extensions: 177825
Number of successful extensions: 286
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1082538160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)