Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00954
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 157 1e-38
02_05_0790 - 31768131-31768269,31768343-31768503,31768845-317689... 46 2e-05
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 45 6e-05
01_04_0038 - 15339047-15339230,15339683-15339741,15340031-153401... 29 4.4
03_02_0235 + 6644083-6644125,6645218-6645315,6645448-6645498,664... 28 5.8
05_03_0201 - 9762563-9762843,9763037-9763919,9763988-9764036,980... 28 7.6
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 157 bits (380), Expect = 1e-38
Identities = 83/136 (61%), Positives = 96/136 (70%), Gaps = 1/136 (0%)
Frame = +3
Query: 258 IDTPVFELKDVLTGKYGEDSKLIYDLKDQGGEILSLRYDLTVPLARYLAMNKITTLKRYH 437
+DTPVFEL++ L GKYGEDSKLIYDL DQGGE+ SLRYDLTVP ARY+AMN I++LKRY
Sbjct: 486 LDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNNISSLKRYQ 545
Query: 438 IAKVYRRDNPAMTRGRYREFYQCDLT*L-VYMILWYLMQNA*R**QRS*KLLT*GNISSK 614
IAKVYRRDNP ++GRYREFYQCD VY + + + L G K
Sbjct: 546 IAKVYRRDNP--SKGRYREFYQCDFDIAGVYETMEPDFE-VIKVLTELLDQLDIGTYEIK 602
Query: 615 WNHRRLLDGMFEACGV 662
NHR+LLDGM E CGV
Sbjct: 603 LNHRKLLDGMLEICGV 618
Score = 53.2 bits (122), Expect = 2e-07
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +2
Query: 509 FDIAGVYDPMVPDAECLKVVTEILEALDIGQYILKVEPQKI 631
FDIAGVY+ M PD E +KV+TE+L+ LDIG Y +K+ +K+
Sbjct: 568 FDIAGVYETMEPDFEVIKVLTELLDQLDIGTYEIKLNHRKL 608
Score = 39.9 bits (89), Expect = 0.002
Identities = 17/33 (51%), Positives = 21/33 (63%)
Frame = +1
Query: 154 KTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGA 252
K PKGTRD+ +QM IR + I VF+ HGA
Sbjct: 451 KIPKGTRDFGKEQMAIREHAFSIITGVFKMHGA 483
>02_05_0790 -
31768131-31768269,31768343-31768503,31768845-31768973,
31769770-31769912,31770215-31770332,31771070-31771144,
31771528-31771620,31771750-31771879,31772038-31772126,
31772411-31772506,31772610-31772900
Length = 487
Score = 46.4 bits (105), Expect = 2e-05
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 4/89 (4%)
Frame = +3
Query: 258 IDTPVFELKDVLTGKYGED-SKLIYDLKDQGGEILSLRYDLTVPLAR-YLAMNKITT--L 425
+D PV E + + K GE+ ++ +Y+ +D+GG + LR ++T LAR + K + L
Sbjct: 107 VDFPVLESEALFIRKAGEEITQQLYNFEDKGGRRVVLRPEITPSLARLVIKQGKSVSLPL 166
Query: 426 KRYHIAKVYRRDNPAMTRGRYREFYQCDL 512
K + I + +R + MTRGR RE YQ ++
Sbjct: 167 KWFTIGQCWRYER--MTRGRRREHYQWNM 193
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 133 GPQKFTLKTPKGTRDYNPQQMTIRNNVLDKIITVFR 240
G + P+GTRD+ P+ M +R + D+ V R
Sbjct: 65 GASVVDVNPPRGTRDFPPEDMRLRTWLFDQFREVSR 100
>04_04_0350 + 24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 44.8 bits (101), Expect = 6e-05
Identities = 21/56 (37%), Positives = 32/56 (57%)
Frame = +3
Query: 291 LTGKYGEDSKLIYDLKDQGGEILSLRYDLTVPLARYLAMNKITTLKRYHIAKVYRR 458
L GK+ E+ + QGGE+L L Y+L P + N+I + KRY ++ V+RR
Sbjct: 879 LEGKFTENRGKTVKILTQGGEMLELCYELRTPFVMSVVANQILSFKRYEVSWVHRR 934
>01_04_0038 -
15339047-15339230,15339683-15339741,15340031-15340160,
15340248-15340498,15340632-15341225,15342050-15342511
Length = 559
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 13 IQEQGDLVRKLKAAKDSNERVKEEVSKL 96
++E+GD V +LKAAK S + + V++L
Sbjct: 232 VKEKGDAVAQLKAAKASKQEITAAVAEL 259
>03_02_0235 +
6644083-6644125,6645218-6645315,6645448-6645498,
6645573-6645686,6645771-6645971,6646047-6646148,
6647245-6647352,6647745-6647995,6648108-6648279,
6648341-6648397,6648555-6648710,6648807-6648857,
6649053-6649193,6649270-6649464,6649534-6649665,
6649768-6649941,6650396-6650635,6650761-6650955
Length = 826
Score = 28.3 bits (60), Expect = 5.8
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 527 YDPMVPDAECLKVVTEILEALDIGQYILKVEPQKI 631
+DP + +C +V+T++L L+ G+ KVE ++
Sbjct: 36 HDPQLDARKCSQVITKLLYLLNQGETFTKVEATEV 70
>05_03_0201 -
9762563-9762843,9763037-9763919,9763988-9764036,
9806710-9807680
Length = 727
Score = 27.9 bits (59), Expect = 7.6
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = -2
Query: 369 ILMKEFPHLGLSNHRLILNPHHTSQ*AHPLAQKQVYQYISSVSPKNC 229
+ +KE P LGL+ + P HT P Q + + ++P C
Sbjct: 438 VYVKEAPSLGLAGQTSLNQPPHTKSSLQPSVQSRELNGENPLNPGKC 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,690,471
Number of Sequences: 37544
Number of extensions: 324475
Number of successful extensions: 687
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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