Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00954
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)         113   9e-26
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_21893| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)                30   1.5  
SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)        29   4.5  
SB_21399| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_46639| Best HMM Match : G_glu_transpept (HMM E-Value=0)             28   7.8  
SB_48398| Best HMM Match : BBE (HMM E-Value=4.1)                       28   7.8  
SB_26656| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)
          Length = 518

 Score =  113 bits (273), Expect = 9e-26
 Identities = 71/138 (51%), Positives = 81/138 (58%), Gaps = 3/138 (2%)
 Frame = +3

Query: 258 IDTPVFELKDVLTGKYG-EDSKLIYDL--KDQGGEILSLRYDLTVPLARYLAMNKITTLK 428
           IDTPVFELK  L G      S +++ L  K +    +SL   L VP ARY+AMNKI  +K
Sbjct: 114 IDTPVFELK--LNGPAELVYSVILWSLIAKSKSLVSISLTLRLQVPFARYVAMNKIDKIK 171

Query: 429 RYHIAKVYRRDNPAMTRGRYREFYQCDLT*LVYMILWYLMQNA*R**QRS*KLLT*GNIS 608
           RYHIAKVYRRDNPAMTRGRYREFYQCD+                +        L  G+  
Sbjct: 172 RYHIAKVYRRDNPAMTRGRYREFYQCDIDIAGQYDAMIPDAECVKIVAEILADLELGDFK 231

Query: 609 SKWNHRRLLDGMFEACGV 662
            K NHRRLLDGMF  CGV
Sbjct: 232 IKVNHRRLLDGMFAVCGV 249



 Score = 71.7 bits (168), Expect = 5e-13
 Identities = 41/86 (47%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
 Frame = +1

Query: 7   LKIQEQGDLVRK---LKAAKDSNERVKEEVSKLLALKAQLVTEDAGP-QKFTLKTPKGTR 174
           LK+QEQ D V+    +        ++KEE SKL+ LK +L   D G  QKF LKTPKGTR
Sbjct: 28  LKLQEQTDEVKNKIIINFLCVDISQIKEETSKLVELKKEL--GDGGKTQKFVLKTPKGTR 85

Query: 175 DYNPQQMTIRNNVLDKIITVFRRHGA 252
           DY P+QM +R    + I+  F RHGA
Sbjct: 86  DYMPKQMAVRQRAFEVIVGAFERHGA 111



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 21/40 (52%), Positives = 31/40 (77%)
 Frame = +2

Query: 512 DIAGVYDPMVPDAECLKVVTEILEALDIGQYILKVEPQKI 631
           DIAG YD M+PDAEC+K+V EIL  L++G + +KV  +++
Sbjct: 200 DIAGQYDAMIPDAECVKIVAEILADLELGDFKIKVNHRRL 239


>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1822

 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 24/56 (42%), Positives = 35/56 (62%)
 Frame = +3

Query: 339  DQGGEILSLRYDLTVPLARYLAMNKITTLKRYHIAKVYRRDNPAMTRGRYREFYQC 506
            D  G IL+L YDL +P AR++A ++IT LKR+ I  VYR  +  +     +E Y+C
Sbjct: 1363 DHSGGILALPYDLRIPFARFIARSRITHLKRFDIGCVYR--DKRILGAHPKELYEC 1416


>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +1

Query: 13  IQEQGDLVRKLKAAKDSNERVKEEVSKLLALKAQLVTEDAGPQKFTLKTPKGTRD 177
           + ++ DLV KLKA K+  +R+K E   L A+ A +   +  P     K  +  +D
Sbjct: 691 LDDEPDLVEKLKAKKEQEDRLKAE---LAAIAAPIKVANGAPSVADNKASEDAKD 742


>SB_20226| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +1

Query: 13  IQEQGDLVRKLKAAKDSNERVKEEVSKLLALKAQL 117
           ++EQGDLVRKLK  K     V+  + +L A K  L
Sbjct: 17  VKEQGDLVRKLKEDKAPENDVEIAIKELKARKKAL 51


>SB_21893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 622 WFHFEDILPYVKSF*DLCHYLQAFCI 545
           +F+F++ LPYVKS    C Y   FCI
Sbjct: 38  YFYFDEFLPYVKSLITFCFY---FCI 60


>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
          Length = 1161

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/41 (43%), Positives = 22/41 (53%)
 Frame = +1

Query: 1   LLLKIQEQGDLVRKLKAAKDSNERVKEEVSKLLALKAQLVT 123
           L+ +I +QGD VR LK        V  EV+ LL LKA   T
Sbjct: 431 LMGEITQQGDKVRTLKTGGADKGTVDAEVAVLLKLKADYKT 471


>SB_40203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -2

Query: 201 YCHLLWVVVSCSLWCFKSKLLWAC-IFCYKLSL*SQQL*YFFFNPLIGILRCF*FSNKIT 25
           Y + +W+V++C L+ ++ +L+ AC ++ Y++ L    + Y +   L  +L C  +  +I 
Sbjct: 303 YLYEIWLVLACMLYLYEIRLVLACMLYLYEIWLILACMLYLYEIRL--VLACMLYLYEIR 360

Query: 24  LFL 16
           L L
Sbjct: 361 LVL 363



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/33 (30%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -2

Query: 201 YCHLLWVVVSCSLWCFKSKLLWAC-IFCYKLSL 106
           Y + +W+V++C L+ ++ +L+ AC ++ Y++ L
Sbjct: 459 YLYEIWLVLACMLYLYEIRLVLACMLYLYEIRL 491



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 18/63 (28%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
 Frame = -2

Query: 201 YCHLLWVVVSCSLWCFKSKLLWAC-IFCYKLSL*SQQL*YFFFNPLIGILRCF*FSNKIT 25
           Y + +W+V++C L+ ++ +L+ AC ++ Y++ L    + Y +   L  IL C  +  +I 
Sbjct: 3   YLYEIWLVLACMLYLYEIRLVPACMLYLYEIWLVLACMQYLYEIRL--ILACMLYLYEIR 60

Query: 24  LFL 16
           L L
Sbjct: 61  LVL 63



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/33 (30%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -2

Query: 201 YCHLLWVVVSCSLWCFKSKLLWACI-FCYKLSL 106
           Y + +W+V++C L+ ++ +L+ AC+ + Y++ L
Sbjct: 589 YLYEIWLVLACMLYLYEIRLVLACMQYLYEIRL 621



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -2

Query: 201 YCHLLWVVVSCSLWCFKSKLLWAC-IFCYKLSL*SQQL*YFFFNPLIGILRCF*FSNKIT 25
           Y + +W+V +C L+ ++ +L+ AC ++ Y++ L    + Y +   L  +L C  +  +I 
Sbjct: 146 YLYEIWLVPACMLYLYEIRLVPACMLYLYEIRLVPACMLYLYEIRL--VLACMQYLYEIR 203

Query: 24  LFL 16
           L L
Sbjct: 204 LVL 206



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/33 (30%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -2

Query: 201 YCHLLWVVVSCSLWCFKSKLLWAC-IFCYKLSL 106
           Y + +W+V++C L+ ++ +L+ AC ++ Y++ L
Sbjct: 238 YLYEIWLVLACMLYLYEIRLVLACMLYLYEIWL 270



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/33 (30%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -2

Query: 201 YCHLLWVVVSCSLWCFKSKLLWACI-FCYKLSL 106
           Y + +W+V++C L+ ++ +L+ AC+ + Y++ L
Sbjct: 550 YLYEIWLVLACMLYLYEIRLVLACMQYLYEIWL 582



 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = -2

Query: 201 YCHLLWVVVSCSLWCFKSKLLWAC-IFCYKLSL*SQQL*YFFFNPLIGILRCF*FSNKIT 25
           Y + +W+V++C L+ ++  L+ AC ++ Y++ L    + Y +   +  IL C  +  +I 
Sbjct: 290 YLYEIWLVLACMLYLYEIWLVLACMLYLYEIRLVLACMLYLY--EIWLILACMLYLYEIR 347

Query: 24  LFL 16
           L L
Sbjct: 348 LVL 350


>SB_31911| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1312

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +1

Query: 10   KIQEQGDLVRKLKAAKDSNERVKEEV-SKLLALKAQLVTEDAGPQKFTLKTPKGTRDYNP 186
            K+QE    V KLK AK   E+++EE  +   AL  +    D   +K  L+T    R+ N 
Sbjct: 978  KMQED---VEKLKEAKKHREKMREEFRASFSALGRKASNMDDPSKKELLRTTMALREANK 1034

Query: 187  QQMTIRNNV 213
                ++ N+
Sbjct: 1035 ISQHLKKNI 1043


>SB_10241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 155

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/33 (30%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
 Frame = -2

Query: 201 YCHLLWVVVSCSLWCFKSKLLWAC-IFCYKLSL 106
           Y + +W+V++C L+ ++ +L+ AC ++ Y++ L
Sbjct: 29  YLYEIWLVLACMLYLYEIRLVLACMLYLYEIWL 61



 Score = 27.9 bits (59), Expect = 7.8
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = -2

Query: 201 YCHLLWVVVSCSLWCFKSKLLWACI 127
           Y + +W+V++C L+ ++ +L+ AC+
Sbjct: 94  YLYEIWLVLACMLYLYEIRLVLACM 118


>SB_56522| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.6e-30)
          Length = 3071

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = +1

Query: 4    LLKIQ-EQGDLVRKLKAAKDSNERVKEEVSKLLALKAQLVTEDAGPQKFTLKT 159
            +L++Q  QG L RK+   + +NER+K +      LKA L+  +A      LKT
Sbjct: 1272 ILELQYHQGQLERKITDLETANERLKNDKKD---LKADLIAANATITDLELKT 1321


>SB_21399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 444

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +1

Query: 217 DKIITVFRRHGADVLIHLFLS*RMCLLGS 303
           D I+   R HGADV+IH     R  + GS
Sbjct: 252 DSIVAFARNHGADVVIHQLNEPRWVISGS 280


>SB_46639| Best HMM Match : G_glu_transpept (HMM E-Value=0)
          Length = 566

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +1

Query: 43  LKAAKDSNERVKEEVSKLLALKAQLVTEDAGPQKFTLKTPKGTRDYNPQQMTIRNNVLDK 222
           +K A+D  +     V  L   K ++  ++  P+ F + TP GT         IRN  L  
Sbjct: 75  IKLARDGFQVSAHTVKVLKNPKVEMRLKNGSPRLFKMLTPNGTLPKVGDM--IRNKELAD 132

Query: 223 IITVFRRHGAD 255
            + +  R G D
Sbjct: 133 TLEIIAREGPD 143


>SB_48398| Best HMM Match : BBE (HMM E-Value=4.1)
          Length = 243

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 369 YDLTVPLARYLAMNKITTLKRYHIAKVYRRD 461
           YDLT  L  +L +NK T L R    K++RRD
Sbjct: 84  YDLTDHLPNFLIINKFTELPRRF--KLFRRD 112


>SB_26656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +1

Query: 43  LKAAKDSNERVKEEVSKLLALKAQLVTEDAGPQKFTLKTPKGTRDYNPQQMTIRNNVLDK 222
           +K A+D  +     V  L   K ++  ++  P+ F + TP GT         IRN  L  
Sbjct: 12  IKLARDGFQVSAHTVKVLKNPKVEMRLKNGSPRLFKMLTPNGTLPKVGDM--IRNKELAD 69

Query: 223 IITVFRRHGAD 255
            + +  R G D
Sbjct: 70  TLEIIAREGPD 80


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,886,468
Number of Sequences: 59808
Number of extensions: 396500
Number of successful extensions: 1145
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1132
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)