Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00953
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    27   2.1  
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe...    27   2.1  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    26   4.9  
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    25   6.5  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = -1

Query: 254  ICSCIFLSTQESFSEILSVEIYET*MMMMD--LLNWVL 147
            +C+ + L+  E+F  +LS++ Y    +  D  LL WVL
Sbjct: 2006 LCNNLLLADPETFKRLLSIQRYPVIPLSPDSGLLGWVL 2043


>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 526

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/59 (20%), Positives = 27/59 (45%)
 Frame = +1

Query: 268 FVSAEIIERSKSEARIKISNVLMLLTALASFGAILSGKAAAKRGESVHQMNLDWHKKYQ 444
           F S + + R    A++   +V +  + +   G+++ G   +     +   N+DW  KY+
Sbjct: 36  FESYKSLHRDPKYAKLSEQDVQVFKSIIGKDGSLIDGLDKSTDPADLDAFNIDWMNKYR 94


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 248 SCIFLSTQESFSEILSVEIYE 186
           +CIF+ T  SF E+LS   YE
Sbjct: 135 TCIFIYTVSSFIELLSEPYYE 155


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 269 NGGTSICSCIFLSTQESFSEILSVEIYE 186
           N G+ + +  F S   SFSE L++E+Y+
Sbjct: 477 NTGSPVFNETFYSVLNSFSENLNLEVYD 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,158,996
Number of Sequences: 5004
Number of extensions: 39443
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)