Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00953
         (605 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0384 - 17430316-17430470,17430647-17430813,17431234-174315...    28   6.6  

>10_08_0384 -
           17430316-17430470,17430647-17430813,17431234-17431531,
           17431797-17431880,17432321-17432437,17433883-17433976,
           17434893-17435035,17435134-17435297,17435753-17435918,
           17436394-17436560,17436894-17437020,17439805-17439901
          Length = 592

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = +1

Query: 277 AEIIERSKSEAR-IKISNVLMLLTALASFGAILSGKAAAKRGESVHQMNLDWHKKYQEEH 453
           + ++E S ++A  +KI N + L      F A+L   A A +  + H    +W+ K    H
Sbjct: 25  SRLVEDSPADALLVKIHNPVFLWKVYG-FSALLQRGALAAKSAAFHCSGYNWYLKVSPMH 83

Query: 454 K 456
           K
Sbjct: 84  K 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,586,506
Number of Sequences: 37544
Number of extensions: 218251
Number of successful extensions: 530
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 509
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 530
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1442939384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)