Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00953
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)                  30   1.7  
SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_28965| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1)              29   2.9  
SB_52664| Best HMM Match : Filament (HMM E-Value=0.3)                  29   3.9  
SB_8855| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.1  
SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)               24   7.5  
SB_19076| Best HMM Match : HECT (HMM E-Value=0)                        27   8.9  
SB_32509| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  

>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
          Length = 635

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = +3

Query: 132 VHLHRQDPVQQVHHHHLC----LIDFDRQNFRKRFLCGQKNTRTN*SPSIC 272
           V L  QD V +  HH +C    L+D    N +K+  C + N   N +  +C
Sbjct: 207 VDLKGQDSVPETVHHVVCHVDPLVDTSWVNLKKKVKCRRSNPYQNENDGVC 257


>SB_20397| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -3

Query: 153 GPVGEDEHIFLI*NGRHRAKNILYIIQSLYKL*PQINSRIVILRTPFLL 7
           GP   D  I  +  GRH  K  L I+  +Y     +NSR+ +    F L
Sbjct: 78  GPSPRDSRILCLLAGRHHYKLALNIVLFIYPKSLPLNSRLCVFHDQFTL 126


>SB_28965| Best HMM Match : Ribosomal_S9 (HMM E-Value=2.1)
          Length = 346

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 18/77 (23%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
 Frame = +1

Query: 247 EQIEVPPFVSAEIIERSKSEARIKI-SNVLMLLTALASFGAILSGKAAAKRGESVHQMNL 423
           +++++    +   + +S ++A IK+  N   L     +FG  L  KA A   E   ++ +
Sbjct: 213 QKLDIGNLAAVVSVRKSTAKAFIKLRENQRGLNLVEKNFGLHLKNKAPALLEEKDIELLM 272

Query: 424 DWHKKYQEEHKEKSSAK 474
            + +KY+++ +E  +AK
Sbjct: 273 TFREKYRQKERELENAK 289


>SB_52664| Best HMM Match : Filament (HMM E-Value=0.3)
          Length = 394

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 385 AAKRGESVHQMNLDWHKKYQEEHKEKSSAK 474
           A + G+++ + N +W KKYQE  +E   AK
Sbjct: 34  AGELGKTLLEQNKEWEKKYQEMSEEYVIAK 63


>SB_8855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 318

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/56 (21%), Positives = 28/56 (50%)
 Frame = +1

Query: 328 VLMLLTALASFGAILSGKAAAKRGESVHQMNLDWHKKYQEEHKEKSSAK*INKEFN 495
           V +L + L +  +++  +   +R + +HQ++  W  +YQ E +       +N  +N
Sbjct: 155 VFVLESVLITVESVIRVRVDNRRTDDIHQLDRQWPDRYQREMRRDDRLWLLNGMWN 210


>SB_9702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 23.8 bits (49), Expect(2) = 7.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 141 HRQDPVQQVHHHHL 182
           HR  P+   HHHHL
Sbjct: 111 HRYHPLCHHHHHHL 124



 Score = 22.2 bits (45), Expect(2) = 7.5
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 168 HHHHLC 185
           HHHHLC
Sbjct: 126 HHHHLC 131


>SB_19076| Best HMM Match : HECT (HMM E-Value=0)
          Length = 2018

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +3

Query: 66   INSE*CTKCFLRDVARFILGRCVHLHRQ---DPVQQVHHHHL 182
            + +E CT  F R V +FILGR V  H     DPV      HL
Sbjct: 1775 LQNELCTLTFNRHVIKFILGRRVGWHDLAFFDPVLYESLRHL 1816


>SB_32509| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +3

Query: 99  RDVARFILGRCVHLHRQDPVQQVHHHHLCLIDFDR-QNFRKRFLCGQKNTRTN*SPSICI 275
           +D+A+ I+G  + +         HH H  L+D +R ++  +  L G   TR+N   S C+
Sbjct: 104 KDIAKAIVGLAIVMIEYQKHHNRHHQH-WLLDHERLKDALQTALSGPLATRSNDIKSTCV 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,024,177
Number of Sequences: 59808
Number of extensions: 263278
Number of successful extensions: 681
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)