Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00953
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical p...    30   1.1  
AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear recep...    30   1.1  
AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear recep...    30   1.1  
L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family...    29   3.4  
Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>Z83233-10|CAB05768.2|  364|Caenorhabditis elegans Hypothetical
           protein K06B4.11 protein.
          Length = 364

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 429 PVKIHLMNRFPSLSSSFPRQYCSKTCQSSKKH 334
           P   HL+N F S SS  P  YC   C+ +  H
Sbjct: 2   PSPTHLLNNFESSSSQGPPSYCLICCEVADGH 33


>AF273799-1|AAG15148.1|  365|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 365

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 429 PVKIHLMNRFPSLSSSFPRQYCSKTCQSSKKH 334
           P   HL+N F S SS  P  YC   C+ +  H
Sbjct: 3   PSPTHLLNNFESSSSQGPPSYCLICCEVADGH 34


>AF273798-1|AAG15147.1|  366|Caenorhabditis elegans nuclear receptor
           NHR-53 protein.
          Length = 366

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 429 PVKIHLMNRFPSLSSSFPRQYCSKTCQSSKKH 334
           P   HL+N F S SS  P  YC   C+ +  H
Sbjct: 4   PSPTHLLNNFESSSSQGPPSYCLICCEVADGH 35


>L14324-6|AAA28182.1| 3343|Caenorhabditis elegans Cadherin family
            protein 3 protein.
          Length = 3343

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 211  SENDSCVDKKIQEQIEVPPFVSAEIIERSKSEARIKISNVLMLLTALASFGAILSGKAAA 390
            SE  + VD    +  ++ PF+   I +    + R   +NVLMLL+++   G    G+  A
Sbjct: 1068 SELINHVDLVSTQNSDMKPFMMTLIKDYLSEDVRFSTNNVLMLLSSIHPIGTSF-GRVTA 1126

Query: 391  KRG 399
            + G
Sbjct: 1127 ESG 1129


>Z35600-2|CAA84663.1|  394|Caenorhabditis elegans Hypothetical
           protein F37A8.2 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -1

Query: 116 ETGDIAQKTFCTLFRVYISFNHRLI 42
           ET D + +T C+L    +SFNHR++
Sbjct: 250 ETSDSSSETNCSLSSGTVSFNHRML 274


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,787,277
Number of Sequences: 27780
Number of extensions: 219742
Number of successful extensions: 555
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 555
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)