Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00953
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66780.1 68418.m08418 expressed protein                             29   2.4  
At3g25560.2 68416.m03179 protein kinase family protein contains ...    29   2.4  
At3g25560.1 68416.m03178 protein kinase family protein contains ...    29   2.4  
At2g46375.1 68415.m05772 expressed protein                             29   2.4  
At5g51540.1 68418.m06391 peptidase M3 family protein / thimet ol...    28   5.5  
At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ...    28   5.5  
At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box trans...    27   7.3  
At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ...    27   9.6  

>At5g66780.1 68418.m08418 expressed protein
          Length = 121

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +1

Query: 358 FGAILSGKAAAKRGESVHQMNLDWHKKYQEEHKEKSSAK 474
           FG I  G    ++   +H+ + D+ K    E KEK  A+
Sbjct: 76  FGGIYGGNQTLQKENEIHENHPDYDKTQGSESKEKEKAR 114


>At3g25560.2 68416.m03179 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 636

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 271 VSAEIIERSKSEARIKISNV-LMLLTALASFGAILSGKAAAKRGESVHQMNLDWHKKYQE 447
           ++ E +   +S  +  +    ++LL  +    A+  GKAA +RG       LDW KK Q+
Sbjct: 479 IAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQRGAI-----LDWVKKLQQ 533

Query: 448 EHK 456
           E K
Sbjct: 534 EKK 536


>At3g25560.1 68416.m03178 protein kinase family protein contains
           Prosite:PS00108: Serine/Threonine protein kinases
           active-site signature and PS00107: Protein kinases
           ATP-binding region signature
          Length = 635

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +1

Query: 271 VSAEIIERSKSEARIKISNV-LMLLTALASFGAILSGKAAAKRGESVHQMNLDWHKKYQE 447
           ++ E +   +S  +  +    ++LL  +    A+  GKAA +RG       LDW KK Q+
Sbjct: 478 IAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQRGAI-----LDWVKKLQQ 532

Query: 448 EHK 456
           E K
Sbjct: 533 EKK 535


>At2g46375.1 68415.m05772 expressed protein
          Length = 123

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 22/81 (27%), Positives = 35/81 (43%)
 Frame = +1

Query: 232 DKKIQEQIEVPPFVSAEIIERSKSEARIKISNVLMLLTALASFGAILSGKAAAKRGESVH 411
           D  + +  E+  FV   IIER             + L AL    +     A+ KRG  +H
Sbjct: 27  DSTLYDSYELVSFV--HIIERKLMPFSPLARQPGLTLRALMDKDSDHCSCASTKRGPCIH 84

Query: 412 QMNLDWHKKYQEEHKEKSSAK 474
           +    W+ K ++E KE+ + K
Sbjct: 85  RRKYWWNGKKKDEMKERINKK 105


>At5g51540.1 68418.m06391 peptidase M3 family protein / thimet
           oligopeptidase family protein low similarity to
           SP|Q99797 Mitochondrial intermediate peptidase,
           mitochondrial precursor (EC 3.4.24.59) {Homo sapiens};
           contains Pfam profile PF01432: Peptidase family M3
          Length = 860

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 318 NFKCAYASYCFGKFWSNIVWESCC*E 395
           N+   Y SY + K +++ +W+S C E
Sbjct: 624 NYGAGYYSYLYAKCFASTIWQSICEE 649


>At2g41370.1 68415.m05106 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 491

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 135 HLHRQDPVQQVHHHH 179
           H H QDP    HHHH
Sbjct: 473 HHHHQDPSTMYHHHH 487


>At3g57230.1 68416.m06371 MADS-box protein (AGL16) MADS-box
           transcription factor DEFH125 - Antirrhinum majus,
           PIR:T17029; contains Pfam domain PF00319: SRF-type
           transcription factor (DNA-binding and dimerisation
           domain); contains Pfam domain PF01486: K-box region
          Length = 240

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 391 KRGESVHQMNLDWHKKYQEEHKE 459
           + G  VHQ NLD HKK    H++
Sbjct: 154 REGNLVHQENLDLHKKVNLMHQQ 176


>At3g57130.1 68416.m06360 ankyrin repeat family protein / BTB/POZ
           domain-containing protein contains Pfam domain, PF00023:
           Ankyrin repeat and Pfam domain, PF00651: BTB/POZ domain
          Length = 467

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 123 GRCVHLHRQDPVQQVHHHH 179
           G  +H H  DP    HHHH
Sbjct: 446 GMNLHHHHHDPSTMYHHHH 464


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,804,561
Number of Sequences: 28952
Number of extensions: 193570
Number of successful extensions: 459
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)