Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00952
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    64   2e-11
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    50   4e-07
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po...    40   3e-04
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    29   0.72 
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    27   3.9  
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom...    26   5.1  
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    26   6.7  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    26   6.7  
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    25   8.9  

>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 64.5 bits (150), Expect = 2e-11
 Identities = 32/85 (37%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFENDDDVIIAKIDATANELEHTKITSFPTIKLYSKDNQVHD--YNGE 174
           K L P Y+KL E + +D +V++AKIDAT N++    I+ FPTI  +  +++V+   Y G+
Sbjct: 389 KNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMFFKANDKVNPVRYEGD 447

Query: 175 RTLAGLTKFVETDGEGAEPVPSVTE 249
           RTL  L+ F++      EP+    E
Sbjct: 448 RTLEDLSAFIDKHA-SFEPIKKEKE 471



 Score = 34.7 bits (76), Expect = 0.015
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFENDDDVIIAKIDAT--ANELEHTKITSFPTIKLYSKDNQVHDYNGE 174
           K L P Y+   +  E D  + + ++D T   +      I  +PT+ ++    Q+  Y+G 
Sbjct: 55  KALAPEYESAADELEKDG-ISLVEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQYSGP 113

Query: 175 RTLAGLTKFV 204
           R    L K++
Sbjct: 114 RKHDALVKYM 123


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFENDDDVIIAKIDATANE--LEHTKITSFPTIKLYSKD-NQVHDYNG 171
           K L P+Y++LG  FE+ +DV+I KIDA  +    +   IT FPT+  +  D ++   Y+ 
Sbjct: 55  KSLAPVYEELGALFEDHNDVLIGKIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSN 114

Query: 172 ERTLAGLTKFV 204
            R +  LT+FV
Sbjct: 115 ARDVDSLTQFV 125



 Score = 48.8 bits (111), Expect = 8e-07
 Identities = 27/72 (37%), Positives = 44/72 (61%), Gaps = 4/72 (5%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFENDDDVIIAKI--DATANELEHTKITSFPTIKLYSKDNQVHD--YN 168
           K+L P Y+ LG+ F+N+ +V I KI  D  A+     ++ SFPTIK + KD++     Y 
Sbjct: 174 KRLAPTYETLGKVFKNEPNVEIVKINADVFADIGRLHEVASFPTIKFFPKDDKDKPELYE 233

Query: 169 GERTLAGLTKFV 204
           G+R+L  L +++
Sbjct: 234 GDRSLESLIEYI 245


>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 363

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 28/75 (37%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFENDDDVIIAKIDATANEL--EHTKITSFPTIKLY---SKDNQVH-- 159
           K+LVP Y KL  +  +   V     DA  N       ++  FPTIKL    SK + +   
Sbjct: 64  KKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSST 123

Query: 160 DYNGERTLAGLTKFV 204
           DYNG+R+   L KFV
Sbjct: 124 DYNGDRSYKSLQKFV 138


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = -3

Query: 301 RPSVYNSSLAGTSSSSRIRSQKVLARRLHR 212
           RPS +     GTSSS+ I + K+LAR+L R
Sbjct: 18  RPSKWLFQSYGTSSSANILNGKLLARKLQR 47


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +3

Query: 477 ILKYSKFDYAPLATF*F*FNKNLRS--KSTAVKYFECESYF 593
           +L+YS+ DY PL+   F  N  LR+  K +A++     S F
Sbjct: 612 LLEYSRIDYLPLSNIVFISNSALRTDRKPSALESSRLSSLF 652


>SPCC1442.02 ||SPCC1450.18|DUF1760 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 562

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 118 FPTIKLYSKDNQVHDYNGERTLAGLTKFVE 207
           FPT+      +Q+++Y GE    GL  ++E
Sbjct: 526 FPTVYFTKISDQINNYEGELPTDGLKYYIE 555


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 176 GHWPASPSSLRPTVK 220
           G+WP  PSS+RP  K
Sbjct: 384 GNWPNYPSSIRPLAK 398


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
 Frame = -3

Query: 421 NLENNSTNSLANKMQIFVSI--KSK*L*LYSTILWKSHKRAPRPSVYNSS---LAGTSSS 257
           +++ N T ++  +  + V +  K K     ST    SH R+     ++SS   L GTS+S
Sbjct: 63  SIKENDTQTIGRRPSMRVKLFGKDKSKASMSTNDLPSHPRSQSVMGFSSSTSQLTGTSNS 122

Query: 256 SRIRSQKVLAR 224
           SR R  K + R
Sbjct: 123 SRTRLNKDMRR 133


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +1

Query: 22  DKLGEHFENDDDVIIAKIDATANELEHTKITSFPTIKLYSKD-NQVHDYNGERTLAGLTK 198
           D+ G    +  D +I  ++    E E  +      I+ +  +   VHD     TL G+ K
Sbjct: 227 DQHGRIVFDSSDTVIKDLENKDVEAESQEAVVAAPIESHDTEMTNVHDNISRETLNGIYK 286

Query: 199 FVETDGEGAEPVPSVTEFE 255
              TD +     PS+  FE
Sbjct: 287 CYFTDIDQLTICPSLQGFE 305


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,570,107
Number of Sequences: 5004
Number of extensions: 49022
Number of successful extensions: 141
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)