Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00952
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6... 57 1e-08
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 56 4e-08
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 54 9e-08
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 49 5e-06
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781... 48 6e-06
04_03_1011 - 21708503-21708544,21708689-21708898,21709000-217091... 47 2e-05
03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992... 43 2e-04
06_01_0452 + 3198475-3198962,3199062-3199191,3199332-3199497,319... 34 0.14
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 33 0.25
08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,287... 29 5.3
01_06_0213 + 27580635-27581105,27581206-27581298,27581376-275815... 29 5.3
10_08_0745 - 20260136-20260236,20260890-20260937,20261025-202611... 28 7.1
04_04_1050 + 30419673-30419789,30419882-30419977,30420180-304202... 28 9.3
>02_01_0001 -
3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
7538-7667,7753-8255
Length = 577
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/72 (38%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Frame = +1
Query: 1 KQLVPIYDKLGEHFENDDDVIIAKIDATANELEHTKITSFPTIKLY---SKDNQVHDYNG 171
++L P Y+KLG+H D ++IAK+D TANE K FPTI Y K + + G
Sbjct: 462 QELEPTYNKLGKHLRGIDSLVIAKMDGTANEHPRAKPDGFPTILFYPAGKKSFEPITFEG 521
Query: 172 ERTLAGLTKFVE 207
+RT+ + KF++
Sbjct: 522 DRTVVEMYKFIK 533
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 55.6 bits (128), Expect = 4e-08
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Frame = +1
Query: 1 KQLVPIYDKLGEHFENDDDVIIAKIDATANE--LEHTKITSFPTIKLYSKDNQV-HDYNG 171
K L PIY+KL ++ DD V+IA +DA ++ E ++ +PT+K + K N+ DY+G
Sbjct: 153 KHLAPIYEKLASVYKLDDGVVIANLDADKHKDLAEKYGVSGYPTLKFFPKGNKAGEDYDG 212
Query: 172 ERTLAGLTKFV-ETDGEGAEPVPSVTEFERRKMCLPETSYKHLAAA 306
R L KF+ E G + +T R L + + L AA
Sbjct: 213 GRELDDFVKFINEKCGTSRDTKGQLTSEAGRIASLDALAKEFLGAA 258
Score = 50.4 bits (115), Expect = 2e-06
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Frame = +1
Query: 1 KQLVPIYDKLGEHFENDDDVIIAKIDATANELEHTK--ITSFPTIKLYSKDN-QVHDYNG 171
K+L P Y+KLG F+ V IAK+D ++ +K ++ +PTI+ + K + + Y G
Sbjct: 34 KKLAPEYEKLGASFKKAKSVFIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYEG 93
Query: 172 ERTLAGLTKFVETDG 216
+R+ L +FV T+G
Sbjct: 94 QRSAEALAEFVNTEG 108
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 54.4 bits (125), Expect = 9e-08
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Frame = +1
Query: 1 KQLVPIYDKLGEHFENDDDVIIAKIDATANE--LEHTKITSFPTIKLYSKDNQV-HDYNG 171
K L PIY+KL ++ D+ V+IA +DA + E ++ FPT+K + K N+ DY+G
Sbjct: 182 KHLAPIYEKLASVYKQDEGVVIANLDADKHTALAEKYGVSGFPTLKFFPKGNKAGEDYDG 241
Query: 172 ERTLAGLTKFV 204
R L KF+
Sbjct: 242 GRELDDFVKFI 252
Score = 47.6 bits (108), Expect = 1e-05
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Frame = +1
Query: 1 KQLVPIYDKLGEHFENDDDVIIAKIDATANELEHTK--ITSFPTIKLYSKDN-QVHDYNG 171
K+L P Y+KLG F+ V+IAK+D ++ +K ++ +PTI+ + K + + Y G
Sbjct: 63 KKLAPEYEKLGASFKKAKSVLIAKVDCDEHKSVCSKYGVSGYPTIQWFPKGSLEPKKYEG 122
Query: 172 ERTLAGLTKFVETD 213
+RT L ++V ++
Sbjct: 123 QRTAEALAEYVNSE 136
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 48.8 bits (111), Expect = 5e-06
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +1
Query: 1 KQLVPIYDKLGEHFENDDDVIIAKIDATANEL-EHTKITSFPTIKLYSKDNQVHDYNGER 177
K+L PI D+ ++D DV+IAK+DATAN++ + +PT+ + ++ Y R
Sbjct: 418 KKLAPILDEAATTLKSDKDVVIAKMDATANDVPSEFDVQGYPTLYFVTPSGKMVPYESGR 477
Query: 178 TLAGLTKFVETDGEGA 225
T + F++ + E A
Sbjct: 478 TADEIVDFIKKNKETA 493
>02_04_0214 -
20976977-20977171,20977499-20977611,20978041-20978158,
20978585-20978701,20978836-20978973,20979193-20979318,
20979827-20980015,20980539-20980863,20980977-20981134
Length = 492
Score = 48.4 bits (110), Expect = 6e-06
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 1 KQLVPIYDKLGEHFENDDDVIIAKIDATANEL-EHTKITSFPTIKLYSKDNQVHDYNGER 177
++L PI +++ ++D+DV+IAK+D TAN++ + +P++ YS + Y+G R
Sbjct: 404 QKLAPILEEVAVSLKDDEDVVIAKMDGTANDVPSDFAVEGYPSMYFYSSGGNLLPYDG-R 462
Query: 178 TLAGLTKFVETDGEGAEPVPSVT 246
T + F+ T +G+ P + T
Sbjct: 463 TAEEIIDFI-TKNKGSRPGEATT 484
>04_03_1011 -
21708503-21708544,21708689-21708898,21709000-21709112,
21709232-21709349,21709386-21709412,21709671-21709808,
21710069-21710194,21710279-21710467,21710598-21710885,
21710937-21711024,21711120-21711298
Length = 505
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Frame = +1
Query: 16 IYDKLGEHFENDDDVIIAKIDATANEL-EHTKITSFPTIKLYSKDNQVHDYNGERTLAGL 192
I +++ ++D D++IAK+D T N++ + +PTI YS + Y+G RT +
Sbjct: 403 ILEEIAVSLQDDQDIVIAKMDGTVNDIPTDFTVEGYPTIYFYSSSGNLLSYDGARTAEEI 462
Query: 193 TKFV-ETDGEGAEPVPSVTE 249
F+ E G A +V E
Sbjct: 463 ISFINENRGPKAGAAAAVDE 482
>03_02_0621 -
9923163-9923245,9924163-9924338,9924437-9924495,
9924952-9924984,9925060-9925185
Length = 158
Score = 43.2 bits (97), Expect = 2e-04
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 2/77 (2%)
Frame = +1
Query: 1 KQLVPIYDKLGEHFENDDDVIIAKIDATANELEHTKIT--SFPTIKLYSKDNQVHDYNGE 174
K L +++ LG+ E D++ I ++D ++ +K+ S+PT K++ + +V Y G
Sbjct: 74 KNLGTLWEDLGKVMEGADEIEIGQVDCGVSKPVCSKVDIHSYPTFKVFYEGEEVAKYKGP 133
Query: 175 RTLAGLTKFVETDGEGA 225
R + L FV + E A
Sbjct: 134 RNVESLKNFVSDEAEKA 150
>06_01_0452 +
3198475-3198962,3199062-3199191,3199332-3199497,
3199765-3199883,3200056-3200136,3200236-3200322,
3200644-3200715,3200791-3200859,3201349-3201426,
3201540-3201680,3202333-3202386,3202465-3202581
Length = 533
Score = 33.9 bits (74), Expect = 0.14
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Frame = +1
Query: 22 DKLGEHFEN--DDDVIIAKIDATANELEHTKITSFPTIKLY---SKDNQVHDYNGERTLA 186
+KL +HF + ++ A+IDA+ NE +I ++PT+ LY K N + + + L
Sbjct: 447 EKLAKHFNDLGQTNLKFARIDASVNEHPKLQINNYPTLLLYPAQDKSNPI-KLSKKSNLK 505
Query: 187 GLTKFVE 207
+ KFV+
Sbjct: 506 DMAKFVK 512
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/67 (28%), Positives = 29/67 (43%)
Frame = +1
Query: 1 KQLVPIYDKLGEHFENDDDVIIAKIDATANELEHTKITSFPTIKLYSKDNQVHDYNGERT 180
+QL PI++K + V DA + I FPTIK++ DY G R
Sbjct: 63 QQLTPIWEKAAGVLKGVATVAALDADAHKELAQEYGIRGFPTIKVFVPGKPPVDYQGARD 122
Query: 181 LAGLTKF 201
+ + +F
Sbjct: 123 VKPIVEF 129
>08_01_0321 + 2872609-2873027,2873477-2873905,2874743-2874944,
2875909-2875947,2876309-2876354,2877380-2877922,
2878827-2880847,2880972-2881215,2881642-2881684,
2881923-2881962,2883580-2883675,2883712-2883759,
2883964-2884290
Length = 1498
Score = 28.7 bits (61), Expect = 5.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -1
Query: 300 GQVFITRLWQAHLPPLEFGHRRYWLGAFTVG 208
G V RLWQ LP ++F W+ + T+G
Sbjct: 1029 GSVSCPRLWQLSLPCIKFFSLPVWINSSTLG 1059
>01_06_0213 +
27580635-27581105,27581206-27581298,27581376-27581540,
27581640-27581862,27582329-27582429,27582666-27582713,
27583086-27583172,27583745-27583879,27583985-27584140,
27585336-27585545,27585641-27586351,27586429-27586974,
27587872-27588495,27588595-27588699,27590460-27590711,
27590939-27591766
Length = 1584
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 337 STILWKSHKRAPRPSVYNSSLAGTSSSSRIRS 242
S+ L S K AP+PS+ S A TSS S +R+
Sbjct: 704 SSDLTTSGKEAPKPSLGKPSSANTSSDSPVRA 735
>10_08_0745 -
20260136-20260236,20260890-20260937,20261025-20261165,
20261358-20261603,20261744-20262583,20263253-20263286
Length = 469
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +1
Query: 223 AEPVPSVTEFERRKMCLPETSYKHLAAAPSYETSIE 330
A P PS + + +C PE S L AP+ +S+E
Sbjct: 403 AAPWPSSSSVQSLSLCAPEMSLPALPVAPTSGSSVE 438
>04_04_1050 +
30419673-30419789,30419882-30419977,30420180-30420264,
30420352-30420386,30420479-30420544,30420646-30420686,
30420818-30420933,30421101-30421207,30421354-30421491,
30421610-30421744,30421888-30421998
Length = 348
Score = 27.9 bits (59), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 663 DNLCRTFVQPVTRERESTHETDYPLHLWTRIS 758
D CR +V+ R RE+ TDY + L T ++
Sbjct: 289 DKDCRPWVEKYQRSRETVSRTDYEVDLITTLT 320
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,193
Number of Sequences: 37544
Number of extensions: 295520
Number of successful extensions: 826
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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