Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00952
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 90   2e-18
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)              60   2e-09
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)                 57   2e-08
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)                 44   1e-04
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)       42   5e-04
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)           37   0.016
SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)           33   0.19 
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)                 33   0.33 
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)                 29   3.1  
SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)                 29   3.1  
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)                 28   9.5  
SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 40/78 (51%), Positives = 58/78 (74%), Gaps = 1/78 (1%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFENDDDVIIAKIDATANELEHTKITSFPTIKLYSKDNQVHDYNGERT 180
           KQL PI+D+LGE +++  D+++AK+D+TANE+E  K+ SFPTIK + K+ +  DYNG RT
Sbjct: 418 KQLAPIWDQLGEKYKDHADIVVAKMDSTANEVEGVKVHSFPTIKYFPKEGEAVDYNGGRT 477

Query: 181 LAGLTKFVETDGE-GAEP 231
           L    KF+E+ G+ G EP
Sbjct: 478 LDDFVKFLESGGKAGNEP 495


>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 34/70 (48%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
 Frame = +1

Query: 7   LVPIYDKLGEHFENDDDVIIAKIDATANELEHT-KITSFPTIKL-YSKDNQ-VHDYNGER 177
           L P + KLG+HF ND +++IAKIDATAN++  T  +  FPTI    SKD +    ++G R
Sbjct: 559 LEPTFKKLGKHFRNDKNIVIAKIDATANDVPSTYAVEGFPTIYFATSKDKKNPIKFDGGR 618

Query: 178 TLAGLTKFVE 207
            L  L KFVE
Sbjct: 619 ELKDLIKFVE 628



 Score = 39.5 bits (88), Expect = 0.003
 Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFENDDDVI-IAKIDAT-ANEL-EHTKITSFPTIKLYSKDNQVHDYNG 171
           KQL P Y+K  +  +  D  I +A +DAT  +EL +  ++  +PT+K++ K  +  +Y G
Sbjct: 209 KQLAPEYEKAAQELQKHDPPIPLAIVDATIESELAQKYEVQGYPTLKVFRK-GKATEYKG 267

Query: 172 ERTLAGLTKFVET 210
           +R   G+  ++ +
Sbjct: 268 QRDQYGIASYMRS 280


>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 295

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFENDDDVIIAKIDATAN-EL-EHTKITSFPTIKLYSKDNQV-HDYNG 171
           KQL P Y++LGE +    DVIIAK+DA  + +L     +  FPTIK + K +    +YNG
Sbjct: 55  KQLAPTYEQLGEAYTQSSDVIIAKVDADGDRDLGSRFDVKGFPTIKYFPKGSTTPEEYNG 114

Query: 172 ERTLAGLTKFVE--TDGEGAEPV 234
            R +    KF+E  T   G  PV
Sbjct: 115 GRDINDFIKFIEEKTGVRGRVPV 137


>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 1056

 Score = 44.4 bits (100), Expect = 1e-04
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 5/92 (5%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFE-NDDDVIIAKIDAT-ANELEHTK--ITSFPTIKLYSKDNQVHDYN 168
           K+L P Y+   E  + ND  V +AK+D T A +   +K  ++ +PT+K++       DY+
Sbjct: 571 KRLAPEYETAAEALKKNDPPVPLAKVDCTEAGKDTCSKYGVSGYPTLKIFRNGEMSKDYD 630

Query: 169 GERTLAGLTKFVETD-GEGAEPVPSVTEFERR 261
           G R  +G+ ++++   G  +  + SV   E++
Sbjct: 631 GPRDSSGIIRYMKKQAGPSSVEIKSVDHLEKK 662



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 16/31 (51%), Positives = 24/31 (77%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFENDDDVIIAKIDATANE 93
           K L P Y++LGE  ++  D++IAK+DATAN+
Sbjct: 896 KSLEPKYNELGEKLQDVKDIVIAKMDATAND 926


>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
          Length = 271

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFENDDDVIIAKIDAT--ANELEHTKITSFPTIKLYSKDNQVHDYNGE 174
           K   P Y+K  E F++  + + AK+D T   +  +  ++  +PT++ Y     V +Y+G+
Sbjct: 180 KNAKPKYEKAAETFKDQPNRVFAKLDCTKFGDVCDKEEVNGYPTLRYYLYGKFVVEYDGD 239

Query: 175 RTLAGLTKFVE 207
           R    L  F+E
Sbjct: 240 RVTEDLISFME 250


>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
          Length = 186

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 20/67 (29%), Positives = 37/67 (55%)
 Frame = +1

Query: 4   QLVPIYDKLGEHFENDDDVIIAKIDATANELEHTKITSFPTIKLYSKDNQVHDYNGERTL 183
           +L PI+++L E F+++ D+ I+KI+             +PT+ L+    Q  +Y+G R L
Sbjct: 123 KLAPIWERLAEDFKDNADITISKING------------YPTLMLFKDGVQKKEYSGNRDL 170

Query: 184 AGLTKFV 204
             L +F+
Sbjct: 171 DSLYRFI 177


>SB_49513| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-19)
          Length = 975

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
 Frame = +1

Query: 13  PIYDKLGEHFENDDDVIIAKIDATANELE-HTKITSFPTIKLY---SKDNQV-HDYNGER 177
           P+   +   F++   V + +IDA  N+L  +  ++S+P+I L+    KD+ +    N  R
Sbjct: 555 PVLLAVARFFQDISQVSVTRIDADQNDLPWNLTVSSYPSIILFPAGRKDSSIAFPSNTPR 614

Query: 178 TLAGLTKFVETDGEGA 225
           T   L +F+E  G  A
Sbjct: 615 TATRLIEFIEEHGSEA 630


>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 362

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +1

Query: 109 ITSFPTIKLYSKD-NQVHDYNGERTLAGL 192
           I  FPTIK++  + N   DYNG+RT  G+
Sbjct: 13  IRGFPTIKIFGANKNSPQDYNGQRTAQGI 41


>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = +1

Query: 67  AKIDATANE----LEHTKITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVET 210
           AK+D T        ++ KI  +P++KL+       DY G+RT A L  ++E+
Sbjct: 75  AKVDCTDPRSKVLCDNFKIEGYPSVKLFKFGKYAGDYIGQRTDAALVNYMES 126


>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
          Length = 1152

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 34  EHFENDDDVIIAKIDATANELEHTKITSFPTIKLYSKDNQVHDYNGERTLAGL 192
           EHF+     ++A ++ TAN ++ T +        Y +D Q HD   ER L  L
Sbjct: 532 EHFQKRMTSVLAGVEGTANMIDDTLV--------YGRDQQEHDERLERVLKKL 576


>SB_26400| Best HMM Match : RVT_1 (HMM E-Value=1.1e-30)
          Length = 1084

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +1

Query: 34   EHFENDDDVIIAKIDATANELEHTKITSFPTIKLYSKDNQVHDYNGERTLAGL 192
            EHF+     ++A ++ TAN ++ T +        Y +D Q HD   ER L  L
Sbjct: 913  EHFQKRMTSVLAGVEGTANMIDDTLV--------YGRDQQEHDERLERVLKKL 957


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +1

Query: 151  QVHDYNGERTLAGLTKFVETDGEGAEPVPSVTEF 252
            +  DYNG++   G+ K + T     EP+ S + F
Sbjct: 1338 KTEDYNGKKKAIGVNKQLRTSSHRREPLVSTSNF 1371


>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
          Length = 335

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
 Frame = +1

Query: 1   KQLVPIYDKLGEHFENDDDVIIAKIDATANELEHTK--ITSFPTIKLYSKDNQVHD-YNG 171
           ++++ I+D++ + F + DD+++ K +A  +    T+  I  +P  + + K +   + Y+G
Sbjct: 59  QRILQIFDQVADEFADRDDIVVGKSNAYEDVKIATRYWIDRYPMFRYFIKGSTTEETYDG 118


>SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +1

Query: 109 ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFV 204
           I  +PT+ L+    Q  +Y+G R L  L +F+
Sbjct: 1   INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,890,629
Number of Sequences: 59808
Number of extensions: 346568
Number of successful extensions: 936
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)