Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00951
         (737 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7PV96 Cluster: Chromosome chr4 scaffold_32, whole geno...    33   7.3  
UniRef50_A1T0H8 Cluster: Putative uncharacterized protein; n=1; ...    33   9.7  

>UniRef50_A7PV96 Cluster: Chromosome chr4 scaffold_32, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr4 scaffold_32, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 60

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 370 TLSPSHLPHMATRDFSACKNTQGG 299
           T  PSH+ H  T  F ACK T+GG
Sbjct: 8   TYQPSHIKHKRTHGFFACKATKGG 31


>UniRef50_A1T0H8 Cluster: Putative uncharacterized protein; n=1;
           Psychromonas ingrahamii 37|Rep: Putative uncharacterized
           protein - Psychromonas ingrahamii (strain 37)
          Length = 167

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 16/63 (25%), Positives = 30/63 (47%)
 Frame = +1

Query: 397 MSTSQLKINMNLSFCNKKATLPGLSKKKFFFSILQLSICFLKNNHLICCQIFIRKTSAEL 576
           M+  +++  ++    N+KA L  L K K  F   Q  +C LK    +   ++++K   +L
Sbjct: 1   MANVRIQFPLDPKNSNEKAALTELKKWKILFDDGQTDLCLLKQRETLLAGLYLQKIMPDL 60

Query: 577 CPK 585
             K
Sbjct: 61  AEK 63


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 651,238,674
Number of Sequences: 1657284
Number of extensions: 12369197
Number of successful extensions: 25569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 24955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25562
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)