Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00951
         (737 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    26   0.37 
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    25   0.64 
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    25   0.64 
EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxyla...    22   5.9  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
 Frame = +2

Query: 635 VYYQR-WQSVHLNKKMLL 685
           VY  R WQ +HLNKK +L
Sbjct: 531 VYNHRPWQQLHLNKKQIL 548



 Score = 23.4 bits (48), Expect = 1.9
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = +3

Query: 219 YH*YLKTSLIFSF-SQRIDKRSSNGYTPPPCVFLHAEKSRVAMWGRWEGERV 371
           +H +L  S  F   SQR+ + + NG   P  ++   +   +  + R  G RV
Sbjct: 272 FHWHLTDSQSFPLVSQRVPQLAKNGAYGPDMIYTPEDVKALVEYARIRGIRV 323


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 403 TSQLKINMNLSFCNKK 450
           TSQ+K N+  ++CNKK
Sbjct: 87  TSQIKKNVTRAYCNKK 102


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +1

Query: 403 TSQLKINMNLSFCNKK 450
           TSQ+K N+  ++CNKK
Sbjct: 87  TSQIKKNVTRAYCNKK 102


>EU019710-1|ABU25222.1|  475|Tribolium castaneum dopa decarboxylase
           protein.
          Length = 475

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 331 DFSACKNTQGGGV 293
           DF AC   +GGGV
Sbjct: 131 DFLACSGGKGGGV 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,015
Number of Sequences: 336
Number of extensions: 3511
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)