Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00951
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    29   0.91 
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   6.4  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 28.7 bits (61), Expect = 0.91
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -2

Query: 385 FSPFLTLSPSHLPHMATRDFSACKNTQGGGV-YPLELLLSIRCENEKINEVLRYQWYG 215
           F+P  +++P      ++R F       GGG+  PL +LL +   N+K++E+  +   G
Sbjct: 10  FTPLKSIAPRSFSTTSSRAFKVAVLGAGGGIGQPLSMLLKL---NDKVSELALFDIRG 64


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -2

Query: 289 PLELLLSIRCENEKINEVLRYQWYGRISIVGRRLVIISPRVGFTLALLV 143
           PL  +  +   N  ++ +L+  +YG ISI+     I+   +   L  L+
Sbjct: 138 PLSNIFGLIATNHSLSLLLKNNYYGSISILVFAAAIVRSEIALLLMCLI 186


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,791,230
Number of Sequences: 5004
Number of extensions: 55728
Number of successful extensions: 101
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)