Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00951
         (737 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64380.1 68414.m07296 AP2 domain-containing transcription fac...    28   5.6  
At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton sy...    28   5.6  
At5g61210.1 68418.m07678 SNAP25 homologous protein SNAP33 (SNAP3...    28   7.4  
At5g63610.1 68418.m07986 protein kinase, putative similar to cyc...    27   9.8  
At5g14570.2 68418.m01709 transporter, putative similar to trans-...    27   9.8  
At5g14570.1 68418.m01708 transporter, putative similar to trans-...    27   9.8  
At3g45060.1 68416.m04857 high-affinity nitrate transporter, puta...    27   9.8  

>At1g64380.1 68414.m07296 AP2 domain-containing transcription
           factor, putative contains Pfam profile: PF00847 AP2
           domain
          Length = 335

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 126 PYLFAGR*DHGQTSETLL--AASLARAVFAKSIAGSKSRPIEKI 1
           P LF+   DH QTSE +L  AA    A FA ++A  +    +K+
Sbjct: 92  PPLFSSTYDHHQTSELMLQAAAGSPAAAFAAALAAGRVTKKKKL 135


>At1g22710.1 68414.m02838 sucrose transporter / sucrose-proton
           symporter (SUC2) nearly identical to sucrose-proton
           symporter SUC2 [Arabidopsis thaliana] GI:407092
          Length = 512

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 156 WLCWFSFMLFPYLFAGR*DHGQTSE-TLLAAS 64
           W+ WF F+LF   + GR  +G  S+ T  AAS
Sbjct: 290 WIAWFPFLLFDTDWMGREVYGGNSDATATAAS 321


>At5g61210.1 68418.m07678 SNAP25 homologous protein SNAP33 (SNAP33)
           (SNAP33B) / synaptosomal-associated protein SNAP25-like
           1 / snap25a identical to SNAP25 homologous protein
           SNAP33 (AtSNAP33) (Synaptosomal-associated protein
           SNAP25-like 1) (SNAP-25 like protein 1) (Snap25a)
           (Swiss-Prot:Q9S7P9) [Arabidopsis thaliana]
          Length = 300

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = +3

Query: 270 DKRSSNGYTPPPCVFLHAEKSRVAMWGRWEGERVRKGEKMHYNVHISTQNKHEF 431
           D  S N +T  P     +E S   M   + GERV+KG+       + + +K+++
Sbjct: 30  DDESDNKHTLNPSKRTTSEPSLADMTNPFGGERVQKGDSSSSKQSLFSNSKYQY 83


>At5g63610.1 68418.m07986 protein kinase, putative similar to
           cyclin-dependent kinase cdc2MsE [Medicago sativa]
           gi|1806144|emb|CAA65981; contains protein kinase domain,
           Pfam:PF00069
          Length = 470

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 412 VEMWTL*CIFSPFLTLSP 359
           V+MW + CIF+  LTL P
Sbjct: 217 VDMWAVGCIFAELLTLKP 234


>At5g14570.2 68418.m01709 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 397

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 164 FHLGFVGFLSCFFPTYSL 111
           FHL ++   SCFF T+S+
Sbjct: 42  FHLAWLSLFSCFFSTFSI 59


>At5g14570.1 68418.m01708 transporter, putative similar to
           trans-membrane nitrate transporter protein AtNRT2:1
           [Arabidopsis thaliana] GI:3747058, high-affinity nitrate
           transporter ACH1 [Arabidopsis thaliana] GI:3608362;
           contains Pfam profile PF00083: Sugar (and other)
           transporter
          Length = 493

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 164 FHLGFVGFLSCFFPTYSL 111
           FHL ++   SCFF T+S+
Sbjct: 42  FHLAWLSLFSCFFSTFSI 59


>At3g45060.1 68416.m04857 high-affinity nitrate transporter,
           putative similar to trans-membrane nitrate transporter
           protein AtNRT2:1 [Arabidopsis thaliana] GI:3747058,
           high-affinity nitrate transporter ACH1 [Arabidopsis
           thaliana] GI:3608362
          Length = 542

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 164 FHLGFVGFLSCFFPTYS 114
           FHLG++ F +CF  T++
Sbjct: 75  FHLGWISFFTCFISTFA 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,279,309
Number of Sequences: 28952
Number of extensions: 279477
Number of successful extensions: 583
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1624036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)