Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00950
         (691 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    24   1.0  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    24   1.0  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    21   7.2  

>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 181 LYRQPIFLTISNAIRNTTMY-MTIVHWSATFNLYSKATW*NQNLIHFLDPFCKMILILLI 357
           LYR P+  T S  IRN  ++ + + H    F+        N  L+H +     + LI+ I
Sbjct: 314 LYRIPVTKTDSMLIRNINLFSLQLAHQKLEFSACGFFLI-NGTLLHTIVGAVTVYLIMFI 372

Query: 358 HLD 366
             D
Sbjct: 373 QFD 375


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +1

Query: 181 LYRQPIFLTISNAIRNTTMY-MTIVHWSATFNLYSKATW*NQNLIHFLDPFCKMILILLI 357
           LYR P+  T S  IRN  ++ + + H    F+        N  L+H +     + LI+ I
Sbjct: 139 LYRIPVTKTDSMLIRNINLFSLQLAHQKLEFSACGFFLI-NGTLLHTIVGAVTVYLIMFI 197

Query: 358 HLD 366
             D
Sbjct: 198 QFD 200


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 520 NGTHRQEWIAQN 555
           + T R EW+AQN
Sbjct: 428 SSTPRHEWVAQN 439


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,320
Number of Sequences: 336
Number of extensions: 3626
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)