Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00950
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch...    26   4.5  
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    26   5.9  

>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 198

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 373 RKDQDELIKLKSSYRKDQENGLGFDSTTSLLNI 275
           R+DQ+E+ K    Y K  +  L F ST+  +N+
Sbjct: 132 REDQEEITKQARRYAKAMKASLVFCSTSHSINV 164


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/41 (26%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +1

Query: 499 QELSSGYNGTHRQEWI----AQNSPRVHLTAHRKNCVDMII 609
           +++++ Y+G    EW     A   P+V+++A  + C DM++
Sbjct: 263 RDINARYHGEQHFEWSEVRKAFKDPKVYVSATSQFCADMVL 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,819,498
Number of Sequences: 5004
Number of extensions: 59379
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)