Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00950
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1294 - 32424762-32426309                                         30   2.0  
09_02_0019 + 3036563-3036740,3036905-3036913,3037355-3037493,303...    28   6.1  

>04_04_1294 - 32424762-32426309
          Length = 515

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -1

Query: 421 SSQMDVV*QKLL--SIHTRKDQDELIKLKSSYRKDQENGLGFDSTT 290
           SSQ D + +K+   ++H   D D L +  S + + +E  LGFD TT
Sbjct: 222 SSQPDNMQRKIFVGNVHADVDVDRLYEYFSQFGEIEEGPLGFDKTT 267


>09_02_0019 +
           3036563-3036740,3036905-3036913,3037355-3037493,
           3037593-3037678,3037831-3037907,3038004-3038255,
           3039107-3039208
          Length = 280

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 499 QELSSGYNGTHRQEWIAQNSPRVHLTAHRKNCVDMIITEKCVFEV 633
           ++L   Y   H Q  IA  + +VHL   R   +DMI T  C   V
Sbjct: 151 KDLYQEYRDRHIQIAIANPNRQVHLLLSRSGIIDMIGTGWCFVRV 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,969,132
Number of Sequences: 37544
Number of extensions: 343153
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)