Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00950
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32524| Best HMM Match : CoA_trans (HMM E-Value=1.26117e-44)         47   2e-05

>SB_32524| Best HMM Match : CoA_trans (HMM E-Value=1.26117e-44)
          Length = 318

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 20/27 (74%), Positives = 21/27 (77%)
 Frame = +2

Query: 509 VVGTMEHTAKNGSHKILPECTLPLTGK 589
           V+ TMEH AK   HKIL ECTLPLTGK
Sbjct: 194 VIVTMEHVAKGNDHKILEECTLPLTGK 220



 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/22 (77%), Positives = 20/22 (90%)
 Frame = +1

Query: 586 KNCVDMIITEKCVFEVDKEKVL 651
           KNCV+MIITEKCVF+VD E+ L
Sbjct: 220 KNCVNMIITEKCVFDVDPEEGL 241



 Score = 37.5 bits (83), Expect = 0.010
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +3

Query: 450 GKMVKGMGGAMDLVSAP 500
           GKMVKGMGGAMDLVS+P
Sbjct: 175 GKMVKGMGGAMDLVSSP 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,486,809
Number of Sequences: 59808
Number of extensions: 428355
Number of successful extensions: 805
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)